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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0611000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.33 (0.0355) R2 : 0.828
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.96 (0.0969) R2dC : 0.452 R2C : 0.681
β3 : 1.92 (0.111) R2dE : 0.141 R2E : 0.37
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.226 (0.0748) R2dN8 : 0.00525 R2N8 : 0.00651
σ : 0.667
deviance : 205.37
__
_____
C
peak time of C : 13.9
E
wheather : temperature
threshold : -1.252
memory length : 16
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.93
open length of G : 18.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
191.56 0.65 5.34 -0.344 2.94 1.96 -1.93 1.61 -0.296 14 6.001 15 8.97 18.9
194.12 0.649 5.35 -0.391 2.96 1.96 -1.38 -- -0.312 14 4.484 13 8.95 18.9
201.75 0.662 5.35 -0.415 3.01 1.9 -- 0.3 -0.31 14.1 3.434 25 8.93 18.9
201.15 0.661 5.35 -0.444 2.97 1.95 -- -- -0.313 13.9 1.754 15 8.95 18.9
471.65 1.01 5.4 -0.868 -- 4.05 -- -0.0963 -0.407 -- 13.26 22 8.84 15.9
263.13 0.76 5.36 -0.236 3.99 -- -1.01 -- -0.267 15 -- -- -- --
266.56 0.765 5.37 -0.259 3.99 -- -- -- -0.273 15 -- -- -- --
392.8 0.923 5.39 -0.943 -- 3.88 -- -- -0.436 -- 9.639 22 8.8 14.9
205.37 0.667 5.33 -- 2.96 1.92 -- -- -0.226 13.9 -1.252 16 8.93 18.9
1179.89 1.61 5.38 -0.429 -- -- -- -- -0.376 -- -- -- -- --
268.33 0.766 5.36 -- 3.99 -- -- -- -0.244 15 -- -- -- --
396.15 0.927 5.37 -- -- 3.58 -- -- -0.358 -- 2.163 21 8.86 14.9
1184.75 1.61 5.37 -- -- -- -- -- -0.329 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 199.75 temperature 10.0 10 > th dose dependent rect. 9 19
2 199.87 wind 5.0 270 < th dose dependent rect. 3 3
5 201.43 wind 3.0 270 < th dose independent rect. 3 3
8 202.09 radiation 1.0 270 < th dose dependent rect. 3 16
9 203.02 radiation 1.0 270 < th dose independent rect. 3 16
13 204.33 precipitation 0.1 270 < th dose independent rect. 6 21
14 204.33 precipitation 0.1 270 < th dose dependent rect. 6 21
15 204.36 precipitation 0.1 90 < th dose independent rect. 9 18
16 204.36 precipitation 0.1 90 < th dose dependent rect. 9 18
17 204.86 humidity 80.0 270 > th dose independent rect. 3 3
19 205.21 wind 9.0 90 < th dose dependent rect. 3 6
25 205.68 humidity 60.0 270 > th dose dependent rect. 3 3
32 206.17 wind 5.0 90 < th dose independent rect. 3 6
37 206.45 precipitation 0.1 270 < th dose independent rect. 3 3
38 206.45 precipitation 0.1 270 < th dose dependent rect. 3 3
44 206.78 temperature 15.0 90 > th dose independent rect. 9 18
46 206.84 atmosphere 1015.0 270 < th dose dependent rect. 3 3
47 206.88 temperature 15.0 270 > th dose independent rect. 6 21
53 207.06 precipitation 0.1 90 < th dose independent rect. 3 6
54 207.06 precipitation 0.1 90 < th dose dependent rect. 3 6
55 207.25 atmosphere 1015.0 30 < th dose dependent rect. 4 5
57 207.31 atmosphere 1015.0 270 < th dose dependent rect. 4 1
60 207.40 radiation 40.0 90 < th dose independent rect. 3 6
62 207.48 temperature 10.0 270 > th dose independent rect. 3 3
64 207.48 temperature 30.0 270 < th dose independent rect. 3 3
65 207.48 humidity 50.0 270 > th dose independent rect. 3 3
68 207.48 atmosphere 995.0 270 > th dose independent rect. 3 3
69 207.48 atmosphere 1015.0 270 < th dose independent rect. 3 3
70 207.48 radiation 20.0 270 < th dose independent rect. 3 3
78 207.60 wind 9.0 270 < th dose independent rect. 6 21
80 207.63 wind 5.0 270 < th dose independent rect. 4 1
83 207.66 temperature 15.0 270 > th dose independent rect. 19 8
85 207.69 humidity 60.0 90 > th dose independent rect. 3 6
87 207.80 wind 9.0 90 < th dose independent rect. 9 18
88 207.83 atmosphere 1010.0 90 < th dose independent rect. 3 6
89 208.01 humidity 80.0 270 > th dose independent rect. 4 1
92 208.05 radiation 40.0 270 < th dose dependent rect. 3 3
95 208.10 wind 9.0 90 < th dose independent rect. 3 6
96 208.10 temperature 10.0 90 > th dose independent rect. 3 6
100 208.10 atmosphere 995.0 90 > th dose independent rect. 3 6
108 208.14 temperature 30.0 90 < th dose independent rect. 3 6
118 208.35 humidity 70.0 270 > th dose dependent rect. 4 1
128 208.45 wind 9.0 90 < th dose dependent rect. 9 18
131 208.58 temperature 15.0 10 > th dose independent rect. 9 19
132 208.60 precipitation 0.1 270 < th dose independent rect. 20 7
134 208.60 precipitation 0.1 270 < th dose dependent rect. 20 7
149 208.92 wind 5.0 270 < th dose independent rect. 1 7
164 209.39 humidity 50.0 270 > th dose dependent rect. 2 6
165 209.48 radiation 30.0 270 < th dose independent rect. 1 8
166 209.49 temperature 10.0 1440 > th dose independent rect. 4 6
169 209.49 atmosphere 995.0 1440 > th dose independent rect. 4 6
170 209.49 atmosphere 1015.0 1440 < th dose independent rect. 4 6
171 209.49 temperature 10.0 1440 > th dose independent rect. 10 18
175 209.51 wind 9.0 270 < th dose independent rect. 19 8
177 209.53 radiation 1.0 270 < th dose dependent rect. 19 8
179 209.54 temperature 30.0 270 < th dose independent rect. 19 8
180 209.54 humidity 50.0 270 > th dose independent rect. 19 8
181 209.54 atmosphere 995.0 270 > th dose independent rect. 19 8
182 209.54 radiation 1.0 270 < th dose independent rect. 19 8
187 209.54 temperature 10.0 270 > th dose independent rect. 3 16
188 209.54 atmosphere 1015.0 270 < th dose independent rect. 3 16
196 209.59 precipitation 0.1 10 < th dose independent rect. 4 5
198 209.59 precipitation 0.1 10 < th dose dependent rect. 4 5
199 209.66 wind 7.0 270 < th dose independent rect. 20 6
210 209.90 radiation 1.0 270 < th dose dependent sin 1 NA
230 209.93 wind 9.0 10 < th dose independent rect. 9 19
241 210.04 radiation 40.0 270 < th dose dependent rect. 2 7
300 210.31 precipitation 0.1 270 < th dose independent rect. 4 1
301 210.31 precipitation 0.1 270 < th dose dependent rect. 4 1
304 210.38 wind 9.0 270 < th dose independent rect. 3 16
340 210.84 temperature 10.0 270 > th dose independent rect. 4 1
342 210.84 temperature 30.0 270 < th dose independent rect. 4 1
343 210.84 humidity 50.0 270 > th dose independent rect. 4 1
346 210.84 atmosphere 995.0 270 > th dose independent rect. 4 1
347 210.84 atmosphere 1010.0 270 < th dose independent rect. 4 1
349 210.84 radiation 20.0 270 < th dose independent rect. 4 1
352 210.84 temperature 10.0 270 > th dose independent rect. 5 23
358 210.89 temperature 10.0 270 > th dose dependent rect. 20 6
363 210.94 radiation 40.0 270 < th dose dependent rect. 4 1
364 210.95 humidity 50.0 270 > th dose dependent rect. 1 8
366 210.96 atmosphere 995.0 270 > th dose independent rect. 2 18
370 210.97 temperature 10.0 270 > th dose dependent rect. 3 3
373 211.01 radiation 30.0 270 < th dose independent rect. 15 15
391 211.09 radiation 1.0 270 < th dose dependent rect. 4 1
400 211.15 temperature 10.0 10 > th dose dependent rect. 4 5
419 211.26 radiation 1.0 270 < th dose independent rect. 4 1
421 211.27 radiation 1.0 270 < th dose independent sin 1 NA
429 211.36 humidity 50.0 30 > th dose dependent rect. 4 16
490 211.91 radiation 40.0 270 < th dose dependent rect. 15 15
520 212.16 precipitation 0.1 270 < th dose independent rect. 3 16
521 212.16 precipitation 0.1 270 < th dose dependent rect. 3 16
527 212.23 precipitation 0.1 270 < th dose independent rect. 2 18
528 212.23 precipitation 0.1 270 < th dose dependent rect. 2 18
545 212.55 wind 9.0 270 < th dose independent rect. 5 23
548 212.57 temperature 15.0 270 > th dose independent rect. 21 4
563 212.74 wind 9.0 270 < th dose dependent rect. 20 6
566 212.79 wind 5.0 270 < th dose independent rect. 22 3
599 213.05 humidity 50.0 10 > th dose dependent rect. 4 19
606 213.15 precipitation 0.1 270 < th dose independent rect. 6 9
608 213.15 precipitation 0.1 270 < th dose dependent rect. 6 9
677 213.51 humidity 50.0 270 > th dose dependent rect. 20 6
680 213.54 temperature 10.0 270 > th dose independent rect. 6 9
681 213.54 atmosphere 1015.0 270 < th dose independent rect. 6 9
682 213.54 temperature 10.0 270 > th dose independent rect. 15 15
709 213.75 wind 9.0 270 < th dose independent rect. 6 9
761 214.03 wind 9.0 270 < th dose independent rect. 15 15
771 214.17 temperature 10.0 270 > th dose dependent rect. 21 4
812 214.43 atmosphere 1015.0 90 < th dose independent rect. 9 18
813 214.43 temperature 10.0 270 > th dose dependent rect. 23 1
815 214.45 wind 9.0 270 < th dose dependent rect. 21 4
826 214.55 wind 9.0 270 < th dose dependent rect. 6 21
843 214.70 atmosphere 995.0 270 > th dose independent rect. 6 9
880 214.90 atmosphere 995.0 270 > th dose independent rect. 15 15
891 215.03 temperature 15.0 270 > th dose independent rect. 23 1
920 215.23 wind 9.0 1440 < th dose independent rect. 4 5
924 215.23 humidity 50.0 1440 > th dose independent rect. 4 5
931 215.24 wind 5.0 270 < th dose independent rect. 23 1
941 215.30 humidity 50.0 270 > th dose dependent rect. 21 4
948 215.35 atmosphere 995.0 90 > th dose independent rect. 9 18