Os04g0610200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0610200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.6 | 0.317 | 9.63 | 0.793 | 0.415 | 0.15 | -0.306 | 1.91 | 0.646 | 0.00834 | 0.003109 | 4847 | -- | -- |
| 46.5 | 0.318 | 9.66 | 0.775 | 0.411 | 0.528 | -0.393 | -- | 0.68 | 0.147 | 0.3146 | 6820 | -- | -- |
| 46 | 0.316 | 9.63 | 0.809 | 0.417 | 0.14 | -- | 1.91 | 0.645 | 0.107 | -0.001948 | 4846 | -- | -- |
| 46.17 | 0.316 | 9.65 | 0.898 | 0.467 | 0.533 | -- | -- | 0.715 | 0.0703 | 0.3334 | 13781 | -- | -- |
| 56.88 | 0.351 | 9.62 | 0.814 | -- | 0.13 | -- | 2.07 | 0.651 | -- | -0.01265 | 4849 | -- | -- |
| 53.03 | 0.341 | 9.68 | 0.953 | 0.431 | -- | -0.235 | -- | 0.619 | 0.0718 | -- | -- | -- | -- |
| 53.26 | 0.342 | 9.68 | 0.962 | 0.432 | -- | -- | -- | 0.62 | 0.166 | -- | -- | -- | -- |
| 57.9 | 0.354 | 9.65 | 0.826 | -- | 0.529 | -- | -- | 0.704 | -- | 0.4249 | 15384 | -- | -- |
| 54.33 | 0.343 | 9.66 | -- | 0.454 | 0.892 | -- | -- | 0.665 | 0.27 | 0.6669 | 27520 | -- | -- |
| 64.99 | 0.377 | 9.67 | 0.976 | -- | -- | -- | -- | 0.627 | -- | -- | -- | -- | -- |
| 77.68 | 0.412 | 9.7 | -- | 0.445 | -- | -- | -- | 0.513 | 0.284 | -- | -- | -- | -- |
| 67.12 | 0.382 | 9.66 | -- | -- | 0.894 | -- | -- | 0.662 | -- | 0.671 | 24353 | -- | -- |
| 90.14 | 0.443 | 9.69 | -- | -- | -- | -- | -- | 0.518 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 2 | 40.53 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 3 | 40.53 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 9 |
| 4 | 40.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 10 |
| 8 | 40.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 9 | 40.83 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 16 | 40.96 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 29 | 41.08 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 39 | 41.21 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 20 | 9 |
| 42 | 41.24 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 46 | 41.29 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 50 | 41.31 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 5 |
| 53 | 41.34 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 61 | 41.41 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 65 | 41.42 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 67 | 41.42 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 78 | 41.47 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 82 | 41.50 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 89 | 41.56 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 5 |
| 100 | 41.60 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 23 | 5 |
| 105 | 41.61 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 108 | 41.62 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 131 | 41.69 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 132 | 41.69 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 155 | 41.78 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 166 | 41.84 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 12 |
| 179 | 41.88 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 10 |
| 195 | 41.93 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 199 | 41.94 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 245 | 42.11 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 270 | 42.19 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 284 | 42.23 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 355 | 42.42 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 370 | 42.45 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 401 | 42.53 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 410 | 42.54 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 411 | 42.54 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 421 | 42.56 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 422 | 42.56 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 423 | 42.56 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 432 | 42.58 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 439 | 42.59 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 1 | NA |
| 444 | 42.60 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 1 | NA |
| 447 | 42.60 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 514 | 42.71 | wind | 5.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 634 | 42.87 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 692 | 42.92 | wind | 1.0 | 14400 | > th | dose dependent | sin | 9 | NA |
| 701 | 42.93 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 715 | 42.94 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 8 |
| 740 | 42.96 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 747 | 42.97 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 804 | 43.02 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 879 | 43.07 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 936 | 43.12 | wind | 3.0 | 43200 | < th | dose independent | sin | 6 | NA |
| 954 | 43.13 | wind | 3.0 | 43200 | > th | dose independent | sin | 5 | NA |
| 991 | 43.16 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 7 |