Os04g0610100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0610100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.81 | 0.3 | 11 | 1.02 | 0.298 | 0.911 | 0.316 | -0.103 | 0.638 | 3.86 | 69 | 1377 | -- | -- |
| 40.78 | 0.297 | 11 | 1.03 | 0.293 | 0.895 | 0.323 | -- | 0.63 | 3.71 | 67.98 | 1366 | -- | -- |
| 41.06 | 0.298 | 11 | 1.04 | 0.31 | 0.898 | -- | -0.155 | 0.646 | 3.59 | 68.46 | 1346 | -- | -- |
| 40.96 | 0.298 | 11 | 1.03 | 0.357 | 0.822 | -- | -- | 0.609 | 3.39 | 63.78 | 1298 | -- | -- |
| 43.22 | 0.306 | 11 | 1.01 | -- | 0.896 | -- | -0.116 | 0.637 | -- | 67.36 | 1654 | -- | -- |
| 53.52 | 0.343 | 11 | 1.02 | 0.241 | -- | 0.239 | -- | 0.533 | 4.04 | -- | -- | -- | -- |
| 53.68 | 0.343 | 11 | 1.02 | 0.242 | -- | -- | -- | 0.532 | 3.98 | -- | -- | -- | -- |
| 43.23 | 0.306 | 11 | 1.01 | -- | 0.869 | -- | -- | 0.629 | -- | 66.07 | 1659 | -- | -- |
| 68 | 0.384 | 11 | -- | 0.122 | 1.01 | -- | -- | 0.557 | 4.78 | 71.06 | 1564 | -- | -- |
| 56.89 | 0.352 | 11 | 1.03 | -- | -- | -- | -- | 0.539 | -- | -- | -- | -- | -- |
| 80.93 | 0.421 | 11.1 | -- | 0.262 | -- | -- | -- | 0.419 | 3.93 | -- | -- | -- | -- |
| 67.75 | 0.383 | 11 | -- | -- | 1.03 | -- | -- | 0.6 | -- | 81.81 | 1969 | -- | -- |
| 84.69 | 0.43 | 11.1 | -- | -- | -- | -- | -- | 0.425 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.67 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 2 | 39.14 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 9 | 39.39 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 10 | 39.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 14 | 39.52 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 4 |
| 33 | 39.70 | humidity | 70 | 1440 | > th | dose dependent | sin | 21 | NA |
| 34 | 39.71 | humidity | 70 | 1440 | > th | dose dependent | rect. | 2 | 19 |
| 57 | 39.85 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 71 | 39.94 | humidity | 80 | 1440 | < th | dose independent | sin | 22 | NA |
| 89 | 40.02 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 150 | 40.26 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 192 | 40.40 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 14 |
| 199 | 40.41 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 8 |
| 200 | 40.41 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 10 |
| 393 | 40.73 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 496 | 40.86 | humidity | 80 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 586 | 40.97 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 599 | 40.99 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 621 | 41.02 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 627 | 41.02 | humidity | 70 | 1440 | > th | dose dependent | no | NA | NA |
| 656 | 41.07 | humidity | 70 | 1440 | > th | dose independent | sin | 16 | NA |
| 679 | 41.10 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 687 | 41.11 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 706 | 41.12 | humidity | 80 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 709 | 41.12 | humidity | 70 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 710 | 41.13 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 720 | 41.14 | humidity | 60 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 741 | 41.18 | humidity | 80 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 746 | 41.19 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 777 | 41.22 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 797 | 41.24 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 840 | 41.33 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |