Os04g0609700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, FYVE/PHD-type domain containing protein.
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Os04g0609700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, FYVE/PHD-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.47 | 0.191 | 9.48 | 0.0119 | 0.278 | 0.174 | 0.111 | -0.144 | 0.059 | 8.02 | 24.5 | 256 | -- | -- |
| 16.56 | 0.19 | 9.48 | -0.0287 | 0.291 | 0.172 | 0.116 | -- | 0.0476 | 8.06 | 24.49 | 256 | -- | -- |
| 16.51 | 0.189 | 9.48 | 0.0106 | 0.278 | 0.172 | -- | -0.128 | 0.0566 | 7.96 | 24.49 | 254 | -- | -- |
| 16.52 | 0.189 | 9.48 | -0.0359 | 0.293 | 0.163 | -- | -- | 0.0423 | 8.01 | 24.39 | 190 | -- | -- |
| 19.15 | 0.204 | 9.48 | 0.0753 | -- | 0.298 | -- | -0.26 | 0.107 | -- | 25.3 | 413 | -- | -- |
| 18.04 | 0.199 | 9.5 | -0.0905 | 0.344 | -- | 0.0669 | -- | -0.0419 | 7.27 | -- | -- | -- | -- |
| 18.06 | 0.199 | 9.5 | -0.0892 | 0.344 | -- | -- | -- | -0.042 | 7.24 | -- | -- | -- | -- |
| 19.28 | 0.204 | 9.49 | -0.00375 | -- | 0.295 | -- | -- | 0.0804 | -- | 25.2 | 470 | -- | -- |
| 16.54 | 0.189 | 9.48 | -- | 0.289 | 0.168 | -- | -- | 0.0495 | 8.06 | 24.4 | 190 | -- | -- |
| 24.32 | 0.23 | 9.51 | -0.083 | -- | -- | -- | -- | -0.0361 | -- | -- | -- | -- | -- |
| 18.26 | 0.2 | 9.5 | -- | 0.343 | -- | -- | -- | -0.0321 | 7.26 | -- | -- | -- | -- |
| 19.28 | 0.204 | 9.48 | -- | -- | 0.297 | -- | -- | 0.0843 | -- | 25.1 | 470 | -- | -- |
| 24.51 | 0.231 | 9.51 | -- | -- | -- | -- | -- | -0.0269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.34 | temperature | 10 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 6 | 15.74 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 10 | 15.77 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 11 | 15.77 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 13 | 15.78 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 15 | 15.78 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 26 | 15.80 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 23 | 5 |
| 94 | 15.88 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 95 | 15.88 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 135 | 15.92 | wind | 9 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 148 | 15.94 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 162 | 15.95 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 8 | NA |
| 164 | 15.95 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 188 | 15.96 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 8 | NA |
| 229 | 15.98 | wind | 9 | 14400 | < th | dose independent | rect. | 3 | 10 |
| 243 | 15.99 | wind | 9 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 307 | 16.02 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 469 | 16.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 491 | 16.10 | wind | 9 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 520 | 16.11 | atmosphere | 1010 | 43200 | < th | dose dependent | sin | 3 | NA |
| 552 | 16.12 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 766 | 16.16 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 798 | 16.16 | atmosphere | 1010 | 43200 | < th | dose dependent | no | NA | NA |
| 873 | 16.17 | atmosphere | 1005 | 43200 | < th | dose independent | no | NA | NA |
| 900 | 16.17 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 10 | 22 |
| 905 | 16.17 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 913 | 16.17 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 951 | 16.17 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 11 | 22 |
| 994 | 16.18 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 23 |