Os04g0609600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phosphatase type 2C.
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Os04g0609600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein phosphatase type 2C.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.55 | 0.242 | 12.1 | 1.01 | 0.211 | -0.366 | -0.0127 | 0.108 | 0.369 | 13.4 | 20.34 | 1446 | -- | -- |
| 26.54 | 0.24 | 12.1 | 0.99 | 0.22 | -0.381 | -0.0487 | -- | 0.358 | 13.2 | 21.19 | 1493 | -- | -- |
| 26.55 | 0.24 | 12.1 | 1.01 | 0.211 | -0.366 | -- | 0.11 | 0.37 | 13.4 | 20.35 | 1449 | -- | -- |
| 26.55 | 0.24 | 12.1 | 0.989 | 0.221 | -0.38 | -- | -- | 0.356 | 13.3 | 21.22 | 1494 | -- | -- |
| 28.4 | 0.248 | 12.1 | 0.978 | -- | -0.379 | -- | 0.127 | 0.356 | -- | 21.23 | 1249 | -- | -- |
| 31.69 | 0.264 | 12.1 | 0.874 | 0.237 | -- | 0.0548 | -- | 0.254 | 13.5 | -- | -- | -- | -- |
| 31.7 | 0.264 | 12.1 | 0.876 | 0.237 | -- | -- | -- | 0.254 | 13.4 | -- | -- | -- | -- |
| 28.18 | 0.247 | 12.1 | 0.975 | -- | -0.439 | -- | -- | 0.357 | -- | 16.94 | 1254 | -- | -- |
| 45.28 | 0.313 | 12.1 | -- | 0.211 | -0.401 | -- | -- | 0.164 | 12.8 | 39.89 | 4328 | -- | -- |
| 35.16 | 0.277 | 12.1 | 0.867 | -- | -- | -- | -- | 0.249 | -- | -- | -- | -- | -- |
| 51.93 | 0.337 | 12.1 | -- | 0.222 | -- | -- | -- | 0.156 | 13.3 | -- | -- | -- | -- |
| 42.25 | 0.303 | 12.1 | -- | -- | -0.742 | -- | -- | 0.289 | -- | 9.883 | 8417 | -- | -- |
| 54.97 | 0.346 | 12.1 | -- | -- | -- | -- | -- | 0.153 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.20 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 22 | 26.23 | radiation | 20 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 42 | 26.27 | radiation | 30 | 1440 | < th | dose dependent | sin | 19 | NA |
| 61 | 26.32 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 107 | 26.35 | radiation | 20 | 1440 | > th | dose independent | sin | 20 | NA |
| 108 | 26.35 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 109 | 26.35 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 8 |
| 183 | 26.41 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 199 | 26.42 | radiation | 20 | 1440 | < th | dose independent | sin | 19 | NA |
| 247 | 26.44 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 251 | 26.44 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 319 | 26.49 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 338 | 26.50 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 480 | 26.56 | radiation | 30 | 1440 | < th | dose dependent | rect. | 1 | 19 |
| 513 | 26.57 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 515 | 26.57 | radiation | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 552 | 26.58 | radiation | 20 | 1440 | > th | dose independent | no | NA | NA |
| 665 | 26.58 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 743 | 26.60 | radiation | 30 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 826 | 26.64 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 828 | 26.64 | radiation | 1 | 1440 | > th | dose dependent | sin | 18 | NA |
| 948 | 26.66 | radiation | 1 | 1440 | > th | dose dependent | rect. | 9 | 10 |