Os04g0609100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0609100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.46 | 0.228 | 11.5 | 0.861 | 0.0928 | -0.225 | -0.336 | -1.25 | 0.215 | 7.49 | 23 | 2260 | -- | -- |
| 26.02 | 0.238 | 11.5 | 0.391 | 0.0579 | -0.257 | -0.431 | -- | 0.0921 | 8.48 | 23.7 | 2704 | -- | -- |
| 23.71 | 0.227 | 11.5 | 0.81 | 0.087 | -0.264 | -- | -1.19 | 0.205 | 7.22 | 22.17 | 2237 | -- | -- |
| 26.6 | 0.24 | 11.5 | 0.362 | 0.0672 | -0.275 | -- | -- | 0.0807 | 7.99 | 23.67 | 2699 | -- | -- |
| 24 | 0.228 | 11.5 | 0.811 | -- | -0.266 | -- | -1.3 | 0.215 | -- | 22 | 1860 | -- | -- |
| 28.98 | 0.252 | 11.5 | 0.5 | 0.0785 | -- | -0.47 | -- | 0.191 | 7.63 | -- | -- | -- | -- |
| 29.56 | 0.255 | 11.5 | 0.488 | 0.0849 | -- | -- | -- | 0.191 | 6.38 | -- | -- | -- | -- |
| 26.75 | 0.241 | 11.5 | 0.346 | -- | -0.311 | -- | -- | 0.0939 | -- | 24.2 | 2943 | -- | -- |
| 28.48 | 0.249 | 11.5 | -- | 0.0656 | -0.403 | -- | -- | -0.0191 | 7.01 | 22.1 | 47520 | -- | -- |
| 29.93 | 0.256 | 11.5 | 0.49 | -- | -- | -- | -- | 0.193 | -- | -- | -- | -- | -- |
| 35.83 | 0.28 | 11.5 | -- | 0.0917 | -- | -- | -- | 0.137 | 6.09 | -- | -- | -- | -- |
| 28.69 | 0.249 | 11.5 | -- | -- | -0.403 | -- | -- | 0.000195 | -- | 21.7 | 47520 | -- | -- |
| 36.27 | 0.281 | 11.5 | -- | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.01 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 6 |
| 5 | 22.10 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 16 | 22.22 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 3 |
| 23 | 22.28 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 28 | 22.35 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 41 | 22.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 46 | 22.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 47 | 22.47 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 50 | 22.48 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 52 | 22.48 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 6 |
| 55 | 22.49 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 61 | 22.50 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 64 | 22.51 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 115 | 22.60 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 120 | 22.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 134 | 22.63 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 2 |
| 186 | 22.71 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 225 | 22.76 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 237 | 22.78 | wind | 7 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 242 | 22.79 | wind | 7 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 280 | 22.84 | wind | 3 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 295 | 22.86 | wind | 7 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 523 | 23.09 | temperature | 25 | 4320 | < th | dose independent | sin | 12 | NA |
| 573 | 23.13 | temperature | 30 | 4320 | < th | dose dependent | sin | 13 | NA |
| 583 | 23.14 | temperature | 10 | 4320 | > th | dose dependent | sin | 13 | NA |
| 850 | 23.37 | temperature | 25 | 4320 | > th | dose independent | sin | 12 | NA |
| 941 | 23.43 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 958 | 23.44 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 23 | 1 |