Os04g0608900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Serine/thronine protein kinase-like protein.
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Os04g0608900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Serine/thronine protein kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.48 | 0.324 | 7.62 | 0.371 | 0.176 | 0.793 | 0.357 | -0.84 | -0.0691 | 11.6 | 8.747 | 8 | -- | -- |
| 47.84 | 0.322 | 7.6 | 0.489 | 0.176 | 0.808 | 0.129 | -- | -0.0405 | 10.7 | 10.56 | 5 | -- | -- |
| 47.73 | 0.322 | 7.61 | 0.431 | 0.172 | 0.841 | -- | -0.416 | -0.0605 | 10.3 | 3.565 | 5 | -- | -- |
| 47.88 | 0.322 | 7.6 | 0.488 | 0.172 | 0.835 | -- | -- | -0.045 | 10.3 | 8.652 | 5 | -- | -- |
| 49.33 | 0.327 | 7.62 | 0.404 | -- | 0.956 | -- | -0.435 | -0.078 | -- | 7.528 | 3 | -- | -- |
| 54.16 | 0.345 | 7.58 | 0.639 | 0.357 | -- | 0.313 | -- | 0.0707 | 12.8 | -- | -- | -- | -- |
| 54.56 | 0.346 | 7.58 | 0.65 | 0.356 | -- | -- | -- | 0.0721 | 12.6 | -- | -- | -- | -- |
| 49.5 | 0.328 | 7.61 | 0.464 | -- | 0.95 | -- | -- | -0.0609 | -- | 5.69 | 5 | -- | -- |
| 53.53 | 0.341 | 7.62 | -- | 0.157 | 1.08 | -- | -- | -0.129 | 8.49 | -10.16 | 10 | -- | -- |
| 62.5 | 0.369 | 7.58 | 0.637 | -- | -- | -- | -- | 0.0658 | -- | -- | -- | -- | -- |
| 65.69 | 0.379 | 7.59 | -- | 0.346 | -- | -- | -- | -0.000308 | 12.5 | -- | -- | -- | -- |
| 54.86 | 0.345 | 7.63 | -- | -- | 1.1 | -- | -- | -0.129 | -- | 2.559 | 5 | -- | -- |
| 73.2 | 0.399 | 7.6 | -- | -- | -- | -- | -- | -0.00485 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.86 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 2 | 46.93 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 22 |
| 4 | 46.97 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 5 | 20 |
| 5 | 47.01 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 18 |
| 8 | 47.10 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 24 | 47.35 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 26 | 47.35 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 28 | 47.36 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 37 | 47.46 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 39 | 47.50 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 47 | 47.56 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 60 | 47.64 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 61 | 47.64 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 67 | 47.65 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 69 | 47.67 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 86 | 47.79 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 13 |
| 87 | 47.79 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 94 | 47.80 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 114 | 47.88 | temperature | 15.0 | 10 | > th | dose dependent | sin | 8 | NA |
| 115 | 47.88 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 117 | 47.88 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 132 | 47.93 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 134 | 47.94 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 146 | 47.96 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 8 | 15 |
| 158 | 47.99 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 160 | 47.99 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 171 | 48.01 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 11 | NA |
| 178 | 48.02 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 182 | 48.02 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 23 | 12 |
| 184 | 48.02 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 185 | 48.03 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 186 | 48.03 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 189 | 48.03 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 9 | 8 |
| 199 | 48.04 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 200 | 48.05 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 219 | 48.06 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 18 | 23 |
| 244 | 48.09 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 17 | 18 |
| 246 | 48.09 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 260 | 48.12 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 274 | 48.13 | wind | 5.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 291 | 48.15 | wind | 5.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 295 | 48.15 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 308 | 48.17 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 312 | 48.17 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 15 | 20 |
| 325 | 48.19 | temperature | 30.0 | 720 | < th | dose dependent | sin | 20 | NA |
| 332 | 48.20 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 14 |
| 347 | 48.21 | atmosphere | 1005.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 356 | 48.21 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 374 | 48.23 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 378 | 48.23 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 4 |
| 379 | 48.23 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 11 |
| 387 | 48.24 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 400 | 48.25 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 401 | 48.25 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 402 | 48.25 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 406 | 48.25 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 4 |
| 412 | 48.25 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 17 | 15 |
| 418 | 48.26 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 430 | 48.26 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 2 | 8 |
| 458 | 48.28 | humidity | 50.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 462 | 48.28 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 463 | 48.28 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 23 | 12 |
| 482 | 48.29 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 485 | 48.29 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 487 | 48.29 | atmosphere | 1010.0 | 4320 | > th | dose dependent | sin | 15 | NA |
| 513 | 48.31 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 13 | 2 |
| 514 | 48.31 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 518 | 48.31 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 545 | 48.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 555 | 48.32 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 556 | 48.33 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 557 | 48.33 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 564 | 48.33 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 578 | 48.33 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 580 | 48.34 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 585 | 48.34 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 588 | 48.34 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 594 | 48.34 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 10 | 10 |
| 608 | 48.35 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 16 | 9 |
| 689 | 48.38 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 701 | 48.39 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 709 | 48.39 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 14 |
| 711 | 48.39 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 23 |
| 739 | 48.40 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 740 | 48.40 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 748 | 48.40 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 7 | 10 |
| 760 | 48.40 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 766 | 48.41 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 791 | 48.42 | wind | 7.0 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 823 | 48.43 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 860 | 48.44 | humidity | 50.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 870 | 48.44 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 874 | 48.44 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 890 | 48.45 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 7 | 11 |
| 897 | 48.45 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 10 | 2 |
| 915 | 48.45 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 6 | 15 |
| 930 | 48.46 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 936 | 48.46 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 9 | 9 |
| 941 | 48.46 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 946 | 48.46 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 7 | 7 |
| 973 | 48.47 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 19 | 6 |