Os04g0608800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : YT521-B-like protein family protein.
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Os04g0608800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : YT521-B-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.44 | 0.242 | 11.5 | -0.836 | 1.13 | -0.603 | 0.286 | 6.64 | 0.255 | 19 | 30 | 4326 | -- | -- |
| 31.25 | 0.262 | 11.4 | 0.315 | 1.15 | 0.0929 | 0.279 | -- | 0.372 | 18.8 | 23.63 | 1856 | -- | -- |
| 26.65 | 0.24 | 11.5 | -0.842 | 1.13 | -0.602 | -- | 6.63 | 0.256 | 18.9 | 29.98 | 4332 | -- | -- |
| 29.45 | 0.253 | 11.4 | 0.401 | 1.09 | 0.205 | -- | -- | 0.402 | 19.1 | 31.8 | 17411 | -- | -- |
| 92.45 | 0.448 | 11.5 | -1.13 | -- | -0.663 | -- | 7.09 | 0.143 | -- | 29.5 | 4299 | -- | -- |
| 31.86 | 0.265 | 11.4 | 0.275 | 1.15 | -- | 0.298 | -- | 0.332 | 18.9 | -- | -- | -- | -- |
| 32.09 | 0.265 | 11.4 | 0.27 | 1.15 | -- | -- | -- | 0.333 | 18.9 | -- | -- | -- | -- |
| 97.96 | 0.461 | 11.4 | 0.422 | -- | 0.227 | -- | -- | 0.382 | -- | 31.42 | 18758 | -- | -- |
| 31.84 | 0.263 | 11.4 | -- | 1.16 | 0.262 | -- | -- | 0.405 | 18.9 | 32.9 | 18588 | -- | -- |
| 101.2 | 0.47 | 11.4 | 0.246 | -- | -- | -- | -- | 0.311 | -- | -- | -- | -- | -- |
| 34.01 | 0.273 | 11.4 | -- | 1.15 | -- | -- | -- | 0.303 | 18.9 | -- | -- | -- | -- |
| 100.55 | 0.467 | 11.4 | -- | -- | 0.303 | -- | -- | 0.393 | -- | 32.9 | 18687 | -- | -- |
| 102.79 | 0.473 | 11.4 | -- | -- | -- | -- | -- | 0.284 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.53 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 2 | 25.78 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 3 | 25.89 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 5 | 25.92 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 7 | 25.97 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 8 | 26.04 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 9 | 26.06 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 11 | 26.07 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 13 | 26.10 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 3 |
| 14 | 26.10 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 17 | 26.14 | radiation | 10 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 40 | 26.29 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 44 | 26.33 | radiation | 20 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 45 | 26.33 | temperature | 30 | 4320 | > th | dose independent | rect. | 9 | 7 |
| 62 | 26.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 14 |
| 70 | 26.36 | temperature | 30 | 4320 | < th | dose independent | sin | 3 | NA |
| 72 | 26.36 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 73 | 26.36 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 10 |
| 95 | 26.39 | temperature | 30 | 4320 | > th | dose independent | sin | 2 | NA |
| 162 | 26.44 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 178 | 26.44 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 22 |
| 182 | 26.44 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 23 |
| 183 | 26.44 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 23 |
| 185 | 26.44 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 23 |
| 207 | 26.45 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 16 |
| 312 | 26.47 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 432 | 26.49 | humidity | 80 | 14400 | < th | dose dependent | rect. | 19 | 7 |
| 463 | 26.50 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 468 | 26.51 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 489 | 26.53 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 23 |
| 495 | 26.54 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 4 |
| 510 | 26.57 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 570 | 26.60 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 595 | 26.63 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 12 |
| 611 | 26.65 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 616 | 26.66 | humidity | 80 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 617 | 26.66 | radiation | 20 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 620 | 26.68 | humidity | 80 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 625 | 26.68 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 680 | 26.71 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 773 | 26.79 | radiation | 30 | 4320 | > th | dose dependent | rect. | 14 | 18 |
| 794 | 26.84 | radiation | 20 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 799 | 26.85 | temperature | 30 | 4320 | < th | dose independent | sin | 11 | NA |
| 823 | 26.86 | radiation | 20 | 4320 | < th | dose independent | rect. | 13 | 20 |
| 832 | 26.87 | radiation | 20 | 1440 | < th | dose independent | rect. | 1 | 13 |
| 859 | 26.88 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 11 | 23 |
| 879 | 26.91 | radiation | 40 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 892 | 26.92 | radiation | 30 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 907 | 26.93 | radiation | 20 | 4320 | < th | dose independent | rect. | 14 | 17 |
| 911 | 26.94 | radiation | 10 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 927 | 26.96 | humidity | 80 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 938 | 26.96 | radiation | 30 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 969 | 26.99 | radiation | 10 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 982 | 27.00 | radiation | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 994 | 27.01 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |