Os04g0608500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 26S proteasome subunit RPN2a.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0608500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 26S proteasome subunit RPN2a.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.09 | 0.235 | 10.8 | 1.6 | 0.346 | -0.674 | -0.199 | 2.25 | 0.561 | 22.3 | 21.54 | 1293 | -- | -- |
| 29.09 | 0.253 | 10.9 | 0.954 | 0.33 | -0.93 | 0.0988 | -- | 0.389 | 18.3 | 13.89 | 8358 | -- | -- |
| 25.19 | 0.234 | 10.8 | 1.65 | 0.334 | -0.669 | -- | 2.33 | 0.565 | 22.2 | 22.27 | 1351 | -- | -- |
| 29.11 | 0.253 | 10.9 | 0.951 | 0.329 | -0.92 | -- | -- | 0.388 | 18.4 | 13.89 | 8358 | -- | -- |
| 31.35 | 0.261 | 10.8 | 1.63 | -- | -0.626 | -- | 2.2 | 0.56 | -- | 21.91 | 1491 | -- | -- |
| 37.21 | 0.286 | 11 | 0.768 | 0.304 | -- | -0.108 | -- | 0.259 | 21.6 | -- | -- | -- | -- |
| 37.26 | 0.286 | 11 | 0.772 | 0.305 | -- | -- | -- | 0.259 | 21.6 | -- | -- | -- | -- |
| 34.36 | 0.274 | 10.9 | 0.914 | -- | -0.763 | -- | -- | 0.36 | -- | 11.79 | 7347 | -- | -- |
| 50.71 | 0.333 | 11 | -- | 0.283 | -0.462 | -- | -- | 0.228 | 20.1 | 13.89 | 8358 | -- | -- |
| 42.76 | 0.306 | 10.9 | 0.775 | -- | -- | -- | -- | 0.259 | -- | -- | -- | -- | -- |
| 52.98 | 0.34 | 11 | -- | 0.307 | -- | -- | -- | 0.173 | 21.8 | -- | -- | -- | -- |
| 38.4 | 0.289 | 10.9 | -- | -- | 0.563 | -- | -- | 0.275 | -- | 35.43 | 47520 | -- | -- |
| 58.59 | 0.357 | 11 | -- | -- | -- | -- | -- | 0.173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 73 | 24.70 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 111 | 24.83 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 117 | 24.85 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 121 | 24.87 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 10 |
| 151 | 24.95 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 359 | 25.31 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 385 | 25.34 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 487 | 25.46 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 572 | 25.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 599 | 25.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 603 | 25.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 622 | 25.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 623 | 25.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 729 | 25.74 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 771 | 25.79 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 789 | 25.80 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 794 | 25.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 795 | 25.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 801 | 25.81 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 847 | 25.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 851 | 25.87 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 938 | 25.95 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 962 | 25.96 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 976 | 25.97 | temperature | 30 | 1440 | < th | dose dependent | sin | 20 | NA |