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Os04g0607000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : PAP fibrillin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.2 (0.017) R2 : 0.821
β1 : -0.912 (0.0623) R2dD : 0.0891 R2D : 0.0625
β2 : 1.07 (0.0422) R2dC : 0.279 R2C : 0.416
β3 : -1.27 (0.0539) R2dE : 0.238 R2E : 0.395
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.474 (0.0363) R2dN8 : 0.0894 R2N8 : 0.0493
σ : 0.318
deviance : 46.53
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_____
C
peak time of C : 11.4
E
wheather : temperature
threshold : 20
memory length : 235
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.1
open length of G : 4.25

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
40.9 0.3 13.2 -0.837 1.07 -1.31 -0.732 1.19 -0.461 11.4 20 238 15.1 4.15
43.07 0.306 13.2 -0.856 1.08 -1.25 -0.781 -- -0.455 11.3 20 230 15.2 4.22
43.07 0.306 13.2 -0.868 1.08 -1.27 -- 1.42 -0.464 11.3 20.08 230 15.2 4.17
46.53 0.318 13.2 -0.912 1.07 -1.27 -- -- -0.474 11.4 20 235 15.1 4.25
77.03 0.409 13.2 -0.949 -- -1.38 -- 0.906 -0.357 -- 18.4 452 15.1 3.95
71.74 0.397 13.2 -0.969 1.56 -- -0.922 -- -0.524 9.55 -- -- -- --
74.9 0.405 13.2 -1 1.57 -- -- -- -0.525 9.54 -- -- -- --
76.33 0.407 13.2 -0.966 -- -1.47 -- -- -0.469 -- 18.4 506 13.9 5.27
68.69 0.386 13.2 -- 1.04 -1.4 -- -- -0.365 11.8 20 257 14.9 4.2
219.68 0.693 13.3 -1.01 -- -- -- -- -0.521 -- -- -- -- --
101.44 0.471 13.2 -- 1.57 -- -- -- -0.413 9.59 -- -- -- --
98.31 0.462 13.2 -- -- -1.46 -- -- -0.365 -- 19.8 508 14.1 4.95
246.85 0.733 13.2 -- -- -- -- -- -0.409 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.23 temperature 20.0 270 > th dose independent rect. 15 4
2 41.36 temperature 10.0 270 > th dose dependent rect. 15 4
5 42.72 humidity 90.0 270 < th dose independent rect. 15 4
6 42.89 temperature 10.0 270 > th dose dependent rect. 16 2
15 43.63 humidity 90.0 270 < th dose independent rect. 16 2
16 43.64 precipitation 0.1 270 < th dose independent rect. 19 20
17 43.64 precipitation 0.1 270 < th dose dependent rect. 19 20
18 43.72 wind 9.0 270 < th dose independent rect. 19 20
19 43.72 atmosphere 995.0 270 > th dose independent rect. 19 20
21 43.82 temperature 10.0 270 > th dose independent rect. 15 4
23 43.82 atmosphere 1010.0 270 < th dose independent rect. 15 4
25 43.82 temperature 10.0 270 > th dose independent rect. 19 20
26 43.83 radiation 40.0 270 < th dose independent rect. 15 4
29 43.94 wind 9.0 270 < th dose independent rect. 15 4
30 44.10 wind 1.0 270 > th dose independent rect. 15 4
31 44.13 atmosphere 1015.0 270 < th dose dependent rect. 15 4
34 44.32 precipitation 0.1 270 < th dose independent rect. 15 4
36 44.32 precipitation 0.1 270 < th dose dependent rect. 15 4
43 44.76 humidity 50.0 270 > th dose independent rect. 19 20
46 45.01 wind 3.0 270 > th dose independent rect. 16 2
49 45.16 temperature 15.0 270 > th dose independent rect. 20 18
60 45.52 radiation 30.0 270 < th dose independent rect. 16 2
61 45.52 wind 9.0 270 < th dose independent rect. 20 18
65 45.58 temperature 10.0 270 > th dose independent rect. 16 2
67 45.58 atmosphere 1010.0 270 < th dose independent rect. 16 2
70 45.58 temperature 10.0 270 > th dose independent rect. 18 22
72 45.60 precipitation 0.1 270 < th dose independent rect. 20 18
74 45.60 precipitation 0.1 270 < th dose dependent rect. 20 18
76 45.63 wind 9.0 270 < th dose independent rect. 16 2
77 45.63 atmosphere 1015.0 270 < th dose dependent rect. 16 2
83 45.68 temperature 10.0 270 > th dose independent rect. 14 6
84 45.68 atmosphere 1015.0 270 < th dose independent rect. 14 6
86 45.68 atmosphere 995.0 270 > th dose independent rect. 20 18
91 45.77 wind 9.0 270 < th dose independent rect. 14 6
92 45.81 wind 1.0 270 > th dose independent rect. 14 6
122 46.32 humidity 50.0 270 > th dose independent rect. 20 18
124 46.39 precipitation 0.1 270 < th dose independent rect. 14 6
126 46.39 precipitation 0.1 270 < th dose dependent rect. 14 6
127 46.40 atmosphere 995.0 270 > th dose independent rect. 15 4
137 46.49 humidity 50.0 270 > th dose independent rect. 18 22
155 46.73 wind 1.0 270 > th dose dependent rect. 15 4
165 46.74 wind 1.0 270 > th dose dependent rect. 16 2
172 46.78 atmosphere 1015.0 10 < th dose dependent rect. 16 5
190 46.95 temperature 10.0 10 > th dose dependent rect. 16 5
201 47.07 radiation 40.0 90 < th dose dependent rect. 16 4
219 47.26 temperature 15.0 10 > th dose independent rect. 21 19
230 47.49 radiation 1.0 270 > th dose independent rect. 15 4
243 47.51 radiation 1.0 270 > th dose independent rect. 15 15
295 47.87 atmosphere 995.0 270 > th dose independent rect. 16 2
296 47.87 precipitation 0.1 10 < th dose independent rect. 16 5
297 47.87 precipitation 0.1 10 < th dose dependent rect. 16 5
307 48.01 wind 1.0 10 > th dose independent rect. 16 5
308 48.02 wind 9.0 10 < th dose independent rect. 21 19
309 48.03 temperature 10.0 10 > th dose independent rect. 16 5
311 48.03 atmosphere 1010.0 10 < th dose independent rect. 16 5
313 48.03 radiation 40.0 10 < th dose independent rect. 16 5
317 48.06 atmosphere 995.0 10 > th dose independent rect. 21 19
344 48.28 temperature 30.0 270 < th dose independent rect. 19 20
349 48.34 wind 1.0 270 > th dose independent rect. 19 20
352 48.35 precipitation 0.1 10 < th dose independent rect. 21 19
354 48.35 precipitation 0.1 10 < th dose dependent rect. 21 19
357 48.39 wind 9.0 270 < th dose independent rect. 7 8
358 48.39 atmosphere 995.0 270 > th dose independent rect. 7 8
366 48.41 atmosphere 995.0 270 > th dose independent rect. 14 6
367 48.41 radiation 40.0 270 < th dose independent rect. 15 16
369 48.42 wind 9.0 270 < th dose independent rect. 19 8
371 48.43 temperature 10.0 270 > th dose independent rect. 7 8
372 48.43 atmosphere 1015.0 270 < th dose independent rect. 7 8
373 48.43 temperature 10.0 270 > th dose independent rect. 15 16
383 48.47 temperature 10.0 270 > th dose independent rect. 19 8
384 48.47 temperature 30.0 270 < th dose independent rect. 19 8
385 48.47 humidity 50.0 270 > th dose independent rect. 19 8
386 48.47 atmosphere 995.0 270 > th dose independent rect. 19 8
387 48.47 radiation 1.0 270 < th dose independent rect. 19 8
392 48.47 temperature 10.0 270 > th dose independent rect. 3 16
393 48.47 atmosphere 1015.0 270 < th dose independent rect. 3 16
394 48.47 radiation 1.0 270 < th dose dependent rect. 19 8
400 48.48 precipitation 0.1 270 < th dose independent rect. 7 8
402 48.48 precipitation 0.1 270 < th dose dependent rect. 7 8
415 48.61 precipitation 0.1 270 < th dose independent rect. 19 8
416 48.61 precipitation 0.1 270 < th dose dependent rect. 19 8
421 48.67 atmosphere 1015.0 270 < th dose independent rect. 19 20
428 48.73 wind 9.0 270 < th dose independent rect. 15 16
455 48.88 atmosphere 995.0 10 > th dose independent rect. 16 5
459 48.90 radiation 1.0 270 > th dose independent rect. 7 8
460 48.91 wind 1.0 270 > th dose independent rect. 7 8
464 48.98 radiation 40.0 270 < th dose dependent rect. 16 2
470 49.05 temperature 30.0 270 < th dose independent rect. 20 18
487 49.13 temperature 10.0 1440 > th dose independent rect. 17 5
490 49.13 radiation 30.0 1440 < th dose independent rect. 17 5
496 49.13 temperature 10.0 1440 > th dose independent rect. 22 19
511 49.14 wind 9.0 270 < th dose independent rect. 3 16
533 49.24 humidity 50.0 90 > th dose independent rect. 16 4
554 49.34 radiation 40.0 90 < th dose dependent rect. 16 17
594 49.44 humidity 50.0 10 > th dose independent rect. 16 5
595 49.44 precipitation 0.1 270 < th dose independent rect. 3 16
598 49.44 precipitation 0.1 270 < th dose dependent rect. 3 16
622 49.54 wind 1.0 270 > th dose independent rect. 20 18
647 49.68 precipitation 0.1 270 < th dose independent rect. 15 16
649 49.68 precipitation 0.1 270 < th dose dependent rect. 15 16
656 49.71 humidity 50.0 270 > th dose independent rect. 7 8
657 49.72 atmosphere 1015.0 270 < th dose independent rect. 20 18
695 49.87 wind 9.0 90 < th dose dependent rect. 16 4
807 50.17 temperature 10.0 270 > th dose dependent rect. 15 17
819 50.20 humidity 50.0 270 > th dose independent rect. 1 9
822 50.21 temperature 10.0 270 > th dose independent rect. 1 9
823 50.21 atmosphere 995.0 270 > th dose independent rect. 1 9
824 50.21 atmosphere 1015.0 270 < th dose independent rect. 1 9
825 50.21 temperature 10.0 270 > th dose independent rect. 10 15
837 50.27 wind 9.0 270 < th dose independent rect. 1 9
841 50.29 radiation 1.0 270 < th dose dependent sin 13 NA
844 50.30 precipitation 0.1 270 < th dose independent rect. 10 15
845 50.30 precipitation 0.1 270 < th dose dependent rect. 10 15
847 50.33 wind 9.0 270 < th dose independent rect. 10 15
900 50.58 wind 1.0 270 > th dose independent rect. 19 9
925 50.66 humidity 50.0 270 > th dose independent rect. 10 15
997 50.94 precipitation 0.1 270 < th dose independent rect. 1 9
999 50.94 precipitation 0.1 270 < th dose dependent rect. 1 9