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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0606000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.49 (0.0546) R2 : 0.721
β1 : -5.72 (0.202) R2dD : 0.546 R2D : 0.499
β2 : 1.58 (0.133) R2dC : 0.085 R2C : 0.0572
β3 : 1.19 (0.177) R2dE : 0.0397 R2E : 0.0358
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.48 (0.125) R2dN8 : 0.138 R2N8 : -0.0442
σ : 0.997
deviance : 457.99
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_____
C
peak time of C : 20.9
E
wheather : radiation
threshold : 29.25
memory length : 19603
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
441.97 0.988 5.45 -6.1 1.6 1.15 -1.8 -2.05 -1.53 20.9 15.64 18738 -- --
452.44 0.991 5.45 -5.96 1.61 1.14 -1.94 -- -1.48 20.9 13.67 19346 -- --
451.73 0.99 5.46 -5.98 1.58 1.21 -- -2.12 -1.52 21 14.36 20849 -- --
457.99 0.997 5.49 -5.72 1.58 1.19 -- -- -1.48 20.9 29.25 19603 -- --
587.51 1.13 5.4 -5.77 -- 1.39 -- -1.79 -1.53 -- 28.46 19631 -- --
495.65 1.04 5.39 -6.13 1.61 -- -1.75 -- -1.11 20.9 -- -- -- --
505.98 1.05 5.39 -6.07 1.61 -- -- -- -1.11 21 -- -- -- --
593.81 1.13 5.41 -5.61 -- 1.37 -- -- -1.46 -- 35.87 19629 -- --
772.27 1.29 5.36 -- 1.33 4.66 -- -- -0.811 20.7 55.38 24345 -- --
655.6 1.2 5.35 -6.07 -- -- -- -- -1.12 -- -- -- -- --
1477.27 1.8 5.24 -- 1.63 -- -- -- -0.432 20.7 -- -- -- --
824.09 1.34 5.05 -- -- 4.63 -- -- 0.135 -- 56.98 26795 -- --
1627.08 1.88 5.2 -- -- -- -- -- -0.445 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 423.66 wind 1e+00 43200 > th dose independent rect. 21 3
2 425.27 wind 1e+00 43200 > th dose independent rect. 18 7
3 425.43 wind 1e+00 43200 > th dose independent rect. 19 5
4 425.93 wind 1e+00 43200 > th dose independent rect. 23 1
6 426.24 wind 1e+00 43200 < th dose independent rect. 21 3
10 427.97 wind 1e+00 43200 < th dose independent rect. 19 5
11 427.98 wind 1e+00 43200 < th dose independent rect. 17 8
18 429.28 wind 9e+00 14400 > th dose dependent rect. 13 1
26 430.64 wind 1e+00 43200 < th dose dependent rect. 19 2
27 430.83 wind 1e+00 43200 < th dose dependent rect. 16 9
34 432.12 wind 9e+00 14400 > th dose independent rect. 13 1
36 432.30 radiation 4e+01 14400 > th dose dependent rect. 12 1
37 432.34 wind 1e+00 43200 < th dose dependent rect. 21 3
38 432.42 wind 1e+00 43200 < th dose dependent rect. 19 5
46 433.25 wind 1e+00 43200 < th dose independent rect. 23 1
53 434.53 humidity 8e+01 14400 < th dose dependent rect. 19 11
66 436.02 radiation 4e+01 14400 < th dose independent rect. 12 1
89 438.06 radiation 4e+01 14400 > th dose independent rect. 12 1
90 438.11 humidity 8e+01 14400 < th dose dependent rect. 3 1
98 438.58 wind 9e+00 14400 < th dose independent rect. 13 1
99 438.58 humidity 8e+01 14400 > th dose independent rect. 19 11
100 438.64 atmosphere 1e+03 30 > th dose independent rect. 20 10
109 439.18 radiation 4e+01 14400 > th dose dependent rect. 12 20
136 439.99 humidity 8e+01 14400 < th dose dependent rect. 19 1
139 440.09 radiation 2e+01 30 < th dose dependent rect. 20 16
144 440.21 radiation 4e+01 14400 < th dose independent rect. 12 20
151 440.40 radiation 4e+01 14400 < th dose independent rect. 12 4
152 440.40 radiation 4e+01 14400 < th dose independent rect. 12 6
157 440.41 radiation 4e+01 14400 < th dose independent rect. 12 15
159 440.42 radiation 4e+01 14400 < th dose independent rect. 12 10
169 440.71 radiation 1e+01 14400 < th dose independent rect. 6 1
194 441.25 humidity 8e+01 14400 < th dose independent rect. 19 11
265 441.81 humidity 8e+01 14400 > th dose independent rect. 2 3
272 441.99 precipitation 1e-01 43200 > th dose independent rect. 17 2
274 442.03 radiation 1e+01 30 < th dose independent rect. 20 16
289 442.29 radiation 4e+01 14400 < th dose independent sin 17 NA
290 442.30 precipitation 1e-01 43200 < th dose independent rect. 17 2
291 442.30 precipitation 1e-01 43200 < th dose dependent rect. 17 2
293 442.32 radiation 1e+01 43200 < th dose dependent rect. 7 4
302 442.44 radiation 2e+01 43200 < th dose dependent rect. 9 1
306 442.55 radiation 2e+01 14400 < th dose independent rect. 8 2
307 442.56 radiation 1e+01 14400 < th dose independent rect. 16 15
375 442.88 radiation 4e+01 14400 < th dose independent rect. 15 23
377 442.91 radiation 1e+01 14400 < th dose independent rect. 1 6
380 442.92 radiation 1e+01 14400 < th dose independent rect. 21 10
383 442.95 radiation 4e+01 14400 < th dose independent rect. 1 13
384 442.95 radiation 4e+01 14400 < th dose independent rect. 21 17
385 442.96 radiation 4e+01 14400 < th dose independent rect. 5 9
394 442.97 radiation 4e+01 14400 < th dose independent rect. 17 21
404 443.00 radiation 4e+01 14400 > th dose dependent sin 15 NA
421 443.20 humidity 8e+01 43200 > th dose independent rect. 19 2
428 443.27 radiation 4e+01 14400 > th dose independent rect. 10 4
431 443.30 humidity 6e+01 14400 < th dose independent rect. 18 2
458 443.43 radiation 4e+01 14400 < th dose independent rect. 21 21
460 443.44 radiation 4e+01 14400 < th dose independent rect. 4 14
470 443.44 radiation 2e+01 30 < th dose dependent rect. 20 14
499 443.45 radiation 4e+01 14400 < th dose independent rect. 4 20
509 443.45 radiation 4e+01 14400 < th dose independent rect. 5 22
517 443.46 radiation 4e+01 14400 < th dose independent no NA NA
690 443.87 radiation 1e+01 30 < th dose independent rect. 20 14
692 443.88 humidity 6e+01 14400 > th dose independent rect. 18 2
710 443.93 humidity 8e+01 14400 < th dose independent rect. 2 2
712 443.96 radiation 4e+01 14400 > th dose dependent rect. 7 7
729 443.98 precipitation 1e-01 43200 < th dose independent rect. 17 7
732 443.98 precipitation 1e-01 43200 < th dose dependent rect. 17 7
749 444.08 precipitation 1e-01 43200 > th dose independent rect. 17 7
765 444.16 radiation 2e+01 14400 < th dose independent rect. 13 21
777 444.29 radiation 1e+01 14400 < th dose independent sin 13 NA
806 444.40 radiation 1e+01 14400 < th dose dependent rect. 5 2
810 444.44 radiation 4e+01 14400 > th dose independent rect. 12 20
812 444.45 radiation 1e+01 14400 < th dose dependent rect. 21 10
820 444.47 radiation 1e+01 14400 < th dose dependent rect. 2 5
843 444.50 humidity 6e+01 14400 < th dose dependent rect. 18 2
953 444.75 precipitation 1e-01 43200 > th dose dependent rect. 20 2