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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0605800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.02 (0.0497) R2 : 0.237
β1 : 0.227 (0.188) R2dD : 0.0028 R2D : -0.00222
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.33 (0.229) R2dE : 0.0639 R2E : 0.104
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.95 (0.932) R2dD*E : 0.0564 R2D*E : 0.0765
γ1 : -0.599 (0.108) R2dN8 : 0.07 R2N8 : 0.0722
σ : 0.924
deviance : 393.61
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_____
C
peak time of C : --
E
wheather : wind
threshold : 3.41
memory length : 3789
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.9
open length of G : 1.05

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
385.18 0.922 4.03 0.163 0.117 1.31 -1.43 5.09 -0.6 21.6 3.348 3789 19.9 1
406.57 0.939 4.02 0.363 0.199 1.68 -1.83 -- -0.587 20.7 3.699 3802 20.1 0.764
392.79 0.923 4.02 0.17 0.125 1.32 -- 5.04 -0.596 21.7 3.413 3789 19.9 1.05
412.9 0.946 4 0.461 0.158 1.66 -- -- -0.531 21.6 3.673 3802 20.1 0.75
393.61 0.924 4.02 0.227 -- 1.33 -- 4.95 -0.599 -- 3.41 3789 19.9 1.05
465.02 1.01 4.04 0.406 0.0918 -- -1.49 -- -0.634 20.5 -- -- -- --
471.3 1.02 4.04 0.448 0.145 -- -- -- -0.637 0.18 -- -- -- --
413.87 0.947 4 0.515 -- 1.7 -- -- -0.51 -- 3.77 3802 20.1 0.75
418.11 0.952 4 -- 0.169 1.74 -- -- -0.499 20.7 3.761 3802 20.1 0.741
472.62 1.02 4.03 0.452 -- -- -- -- -0.635 -- -- -- -- --
476.59 1.02 4.05 -- 0.151 -- -- -- -0.687 0.341 -- -- -- --
419.35 0.954 4 -- -- 1.72 -- -- -0.503 -- 3.786 3802 20.1 0.75
478.02 1.02 4.05 -- -- -- -- -- -0.686 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 390.07 wind 5.0 4320 < th dose independent rect. 20 1
2 392.52 wind 5.0 4320 > th dose independent rect. 20 1
3 394.46 wind 3.0 4320 > th dose dependent rect. 20 1
5 398.02 wind 5.0 4320 > th dose dependent rect. 20 5
8 399.57 atmosphere 1005.0 14400 < th dose independent rect. 23 1
34 403.17 atmosphere 1005.0 14400 > th dose independent rect. 22 2
71 405.31 atmosphere 995.0 14400 > th dose independent rect. 10 3
103 407.10 wind 9.0 43200 > th dose dependent rect. 18 11
112 407.31 atmosphere 1005.0 14400 < th dose independent rect. 3 1
124 407.66 temperature 25.0 30 < th dose dependent rect. 24 23
130 407.76 wind 9.0 43200 > th dose dependent rect. 18 6
145 408.03 atmosphere 1005.0 14400 > th dose independent rect. 2 2
180 408.85 wind 9.0 43200 > th dose dependent rect. 18 4
198 409.48 precipitation 0.1 14400 > th dose dependent rect. 21 1
211 409.82 atmosphere 1005.0 14400 < th dose independent sin 10 NA
252 410.84 atmosphere 1005.0 14400 > th dose independent sin 10 NA
283 411.58 wind 9.0 4320 < th dose dependent rect. 20 1
289 411.77 wind 9.0 43200 > th dose independent rect. 18 3
299 412.01 wind 9.0 43200 > th dose independent rect. 18 6
317 412.40 wind 9.0 43200 > th dose independent rect. 18 10
355 413.30 precipitation 0.1 14400 < th dose independent rect. 20 2
356 413.30 precipitation 0.1 14400 < th dose dependent rect. 20 2
357 413.31 precipitation 0.1 14400 > th dose independent rect. 20 2
370 413.49 wind 9.0 43200 > th dose independent rect. 18 13
397 414.04 wind 9.0 43200 < th dose independent rect. 18 3
407 414.22 precipitation 0.1 14400 > th dose dependent rect. 17 1
441 414.87 precipitation 0.1 4320 < th dose independent rect. 17 1
442 414.87 precipitation 0.1 4320 < th dose dependent rect. 17 1
445 414.89 temperature 20.0 1440 > th dose independent rect. 21 1
447 414.95 temperature 20.0 1440 < th dose independent rect. 21 1
459 415.09 precipitation 0.1 4320 > th dose independent rect. 17 1
480 415.43 atmosphere 995.0 14400 > th dose independent rect. 10 8
483 415.46 atmosphere 995.0 14400 < th dose independent rect. 15 3
484 415.47 atmosphere 995.0 14400 > th dose independent rect. 10 10
559 415.86 atmosphere 1000.0 4320 < th dose independent rect. 12 1
571 415.96 atmosphere 995.0 14400 < th dose dependent rect. 16 1
576 416.02 atmosphere 995.0 14400 > th dose independent rect. 15 3
579 416.05 wind 9.0 43200 < th dose independent rect. 18 7
581 416.06 atmosphere 995.0 14400 < th dose dependent rect. 15 4
603 416.11 atmosphere 995.0 14400 > th dose independent rect. 15 5
612 416.18 atmosphere 1000.0 4320 < th dose independent rect. 10 3
617 416.20 atmosphere 1000.0 4320 < th dose independent rect. 10 1
693 416.53 temperature 25.0 1440 < th dose dependent rect. 14 8
798 417.15 temperature 25.0 1440 < th dose dependent rect. 17 1
818 417.32 temperature 25.0 1440 < th dose dependent rect. 16 3
820 417.33 temperature 20.0 1440 > th dose independent rect. 18 12
847 417.41 atmosphere 1005.0 14400 < th dose independent rect. 7 1
857 417.43 humidity 80.0 1440 > th dose dependent rect. 2 1
872 417.58 atmosphere 1000.0 4320 < th dose dependent rect. 10 1
956 418.03 atmosphere 1005.0 14400 < th dose independent no NA NA
962 418.04 atmosphere 1005.0 14400 < th dose independent rect. 9 23
971 418.10 atmosphere 1005.0 14400 < th dose independent rect. 6 23