Os04g0605200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Low molecular weight phosphotyrosine protein phosphatase family protein.
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Os04g0605200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Low molecular weight phosphotyrosine protein phosphatase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.67 | 0.378 | 7.91 | 0.248 | 1.62 | -0.856 | 1.44 | -0.505 | -0.154 | 19.4 | 20.11 | 287 | -- | -- |
| 65.47 | 0.377 | 7.9 | 0.321 | 1.61 | -0.793 | 1.32 | -- | -0.138 | 19.5 | 20.1 | 291 | -- | -- |
| 69.88 | 0.389 | 7.9 | 0.247 | 1.61 | -0.763 | -- | -0.168 | -0.138 | 19.4 | 20.4 | 226 | -- | -- |
| 69.81 | 0.389 | 7.89 | 0.274 | 1.6 | -0.705 | -- | -- | -0.114 | 19.4 | 20.7 | 231 | -- | -- |
| 198.28 | 0.659 | 7.87 | 0.137 | -- | -0.653 | -- | -0.198 | -0.192 | -- | 20.6 | 47 | -- | -- |
| 84.61 | 0.431 | 7.93 | 0.0667 | 1.55 | -- | 1.16 | -- | -0.285 | 19.7 | -- | -- | -- | -- |
| 88.43 | 0.44 | 7.93 | 0.0378 | 1.55 | -- | -- | -- | -0.283 | 19.7 | -- | -- | -- | -- |
| 195.68 | 0.654 | 7.86 | 0.166 | -- | -0.583 | -- | -- | -0.142 | -- | 22.1 | 30 | -- | -- |
| 71.4 | 0.394 | 7.91 | -- | 1.6 | -0.644 | -- | -- | -0.163 | 19.4 | 20.7 | 224 | -- | -- |
| 218 | 0.69 | 7.89 | 0.0172 | -- | -- | -- | -- | -0.306 | -- | -- | -- | -- | -- |
| 88.47 | 0.44 | 7.93 | -- | 1.55 | -- | -- | -- | -0.287 | 19.7 | -- | -- | -- | -- |
| 196.39 | 0.655 | 7.86 | -- | -- | -0.567 | -- | -- | -0.165 | -- | 22.1 | 30 | -- | -- |
| 218 | 0.689 | 7.89 | -- | -- | -- | -- | -- | -0.308 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.80 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 14 |
| 2 | 57.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 10 |
| 15 | 58.97 | temperature | 25 | 90 | < th | dose dependent | sin | 7 | NA |
| 33 | 59.94 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 20 |
| 36 | 60.18 | temperature | 25 | 270 | < th | dose dependent | sin | 9 | NA |
| 54 | 60.82 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 12 |
| 60 | 61.02 | temperature | 20 | 270 | > th | dose independent | sin | 8 | NA |
| 63 | 61.08 | temperature | 20 | 270 | < th | dose independent | sin | 8 | NA |
| 66 | 61.14 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 85 | 61.54 | temperature | 15 | 90 | > th | dose dependent | sin | 8 | NA |
| 115 | 62.10 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 23 |
| 133 | 62.31 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 19 |
| 222 | 63.39 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 231 | 63.49 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 287 | 63.97 | temperature | 20 | 270 | < th | dose dependent | rect. | 22 | 20 |
| 323 | 64.25 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 18 |
| 457 | 64.93 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 462 | 64.94 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 23 |
| 470 | 64.98 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 570 | 65.54 | temperature | 20 | 10 | < th | dose independent | sin | 6 | NA |
| 580 | 65.58 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 4 |
| 582 | 65.59 | temperature | 20 | 270 | < th | dose dependent | rect. | 15 | 21 |
| 586 | 65.60 | temperature | 20 | 270 | < th | dose dependent | no | NA | NA |
| 591 | 65.61 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 6 |
| 609 | 65.67 | temperature | 20 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 610 | 65.68 | temperature | 20 | 10 | < th | dose independent | rect. | 24 | 12 |
| 615 | 65.68 | temperature | 20 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 781 | 66.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 5 |
| 787 | 66.35 | temperature | 20 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 812 | 66.47 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 837 | 66.55 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 23 |
| 999 | 67.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 15 |