Os04g0605100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WRKY transcription factor 68.
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Os04g0605100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WRKY transcription factor 68.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.7 | 0.36 | 11.4 | -0.16 | 0.799 | 1.19 | -0.201 | 0.475 | -0.0488 | 10.7 | 31.41 | 221 | -- | -- |
| 58.9 | 0.357 | 11.4 | -0.0803 | 0.797 | 1.19 | -0.232 | -- | -0.036 | 10.7 | 31.88 | 216 | -- | -- |
| 58.85 | 0.357 | 11.4 | -0.17 | 0.808 | 1.2 | -- | 0.535 | -0.0503 | 10.7 | 31.45 | 211 | -- | -- |
| 59.14 | 0.358 | 11.4 | -0.0906 | 0.807 | 1.2 | -- | -- | -0.0335 | 10.7 | 31.8 | 210 | -- | -- |
| 77.4 | 0.41 | 11.4 | 0.0417 | -- | 1.58 | -- | -0.157 | 0.0137 | -- | 41.22 | 686 | -- | -- |
| 76.52 | 0.41 | 11.4 | -0.37 | 0.83 | -- | -0.111 | -- | -0.236 | 8.99 | -- | -- | -- | -- |
| 76.56 | 0.41 | 11.4 | -0.374 | 0.83 | -- | -- | -- | -0.236 | 8.98 | -- | -- | -- | -- |
| 77.41 | 0.41 | 11.4 | 0.0196 | -- | 1.56 | -- | -- | 0.0148 | -- | 33.9 | 679 | -- | -- |
| 59.35 | 0.359 | 11.3 | -- | 0.803 | 1.22 | -- | -- | -0.0233 | 10.7 | 31.76 | 209 | -- | -- |
| 116.09 | 0.503 | 11.4 | -0.375 | -- | -- | -- | -- | -0.231 | -- | -- | -- | -- | -- |
| 80.26 | 0.419 | 11.4 | -- | 0.83 | -- | -- | -- | -0.195 | 9.01 | -- | -- | -- | -- |
| 77.39 | 0.41 | 11.4 | -- | -- | 1.56 | -- | -- | 0.00932 | -- | 33.51 | 684 | -- | -- |
| 119.8 | 0.511 | 11.4 | -- | -- | -- | -- | -- | -0.189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 2 | 56.37 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 4 | 56.58 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 18 | 57.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 47 | 58.69 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 53 | 58.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 58 | 58.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 20 |
| 67 | 58.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 17 |
| 69 | 58.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 74 | 59.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 6 |
| 85 | 59.14 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 87 | 59.15 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 88 | 59.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 140 | 59.38 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 141 | 59.39 | temperature | 20 | 1440 | > th | dose dependent | sin | 9 | NA |
| 147 | 59.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 163 | 59.46 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 182 | 59.50 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 250 | 59.77 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 254 | 59.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 345 | 60.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 375 | 60.24 | temperature | 25 | 90 | < th | dose independent | rect. | 6 | 17 |
| 379 | 60.26 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 22 |
| 403 | 60.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 17 |
| 407 | 60.34 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 20 |
| 417 | 60.36 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 17 |
| 422 | 60.37 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 10 |
| 426 | 60.38 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 17 |
| 446 | 60.44 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 10 |
| 467 | 60.48 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 21 |
| 474 | 60.49 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 519 | 60.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 17 |
| 524 | 60.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 15 |
| 580 | 60.64 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 14 |
| 669 | 60.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 678 | 60.73 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 741 | 60.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 9 |
| 808 | 60.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 15 |
| 932 | 60.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |