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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0604800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Xyloglucan endotransglycosylase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.024) R2 : 1.45e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00412 (0.0505) R2dN8 : 1.88e-05 R2N8 : 1.45e-05
σ : 0.452
deviance : 93.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.09 0.446 2.45 -1.5 0.0692 57.5 -0.356 123 0.0189 2 15 1442 -- --
92.06 0.45 3.2 0.0829 0.0674 -0.75 -0.211 -- 0.0152 3.5 15 1442 -- --
90.52 0.443 2.45 -1.49 0.0782 57.6 -- 123 0.0205 3.64 15 1439 -- --
90.69 0.446 3.2 0.13 0.0789 -0.758 -- -- 0.0274 3.86 15.63 584 -- --
90.84 0.444 2.45 -1.46 -- 58 -- 124 0.0238 -- 15.02 1392 -- --
93.1 0.452 3.2 0.0504 0.0698 -- -0.302 -- 0.00736 2.6 -- -- -- --
93.38 0.453 3.2 0.0579 0.0768 -- -- -- 0.00884 4.02 -- -- -- --
91.03 0.446 3.2 0.133 -- -0.755 -- -- 0.0295 -- 15.77 154 -- --
91.11 0.447 3.2 -- 0.0812 -0.691 -- -- 0.012 3.86 15.79 223 -- --
93.7 0.452 3.2 0.061 -- -- -- -- 0.0109 -- -- -- -- --
93.47 0.452 3.2 -- 0.0779 -- -- -- 0.00239 4.01 -- -- -- --
91.46 0.445 3.2 -- -- -0.764 -- -- 0.0134 -- 15.5 236 -- --
93.8 0.452 3.2 -- -- -- -- -- 0.00412 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.76 temperature 25.0 30 < th dose independent rect. 2 1
2 81.78 wind 3.0 30 < th dose dependent rect. 2 1
5 81.79 wind 3.0 30 < th dose independent rect. 2 1
7 81.79 temperature 10.0 30 > th dose dependent rect. 2 1
9 81.79 atmosphere 1015.0 30 < th dose dependent rect. 2 1
10 81.81 wind 9.0 30 < th dose independent rect. 2 1
11 81.81 temperature 10.0 30 > th dose independent rect. 2 1
14 81.81 humidity 50.0 30 > th dose independent rect. 2 1
17 81.81 atmosphere 995.0 30 > th dose independent rect. 2 1
18 81.81 atmosphere 1010.0 30 < th dose independent rect. 2 1
20 81.81 radiation 1.0 30 < th dose independent rect. 2 1
25 81.81 precipitation 0.1 30 < th dose independent rect. 2 1
26 81.81 temperature 10.0 30 > th dose independent rect. 3 23
27 81.81 radiation 1.0 30 < th dose dependent rect. 2 1
32 81.81 precipitation 0.1 30 < th dose dependent rect. 2 1
37 81.82 humidity 50.0 30 > th dose dependent rect. 2 1
38 81.82 atmosphere 1005.0 30 > th dose dependent rect. 2 1
44 81.90 atmosphere 995.0 30 > th dose dependent rect. 2 1
47 81.99 atmosphere 1005.0 30 > th dose independent rect. 2 1
49 82.02 temperature 30.0 30 < th dose dependent rect. 2 1
57 82.48 wind 1.0 30 > th dose independent rect. 2 1
96 82.84 wind 9.0 30 < th dose independent rect. 3 23
107 85.01 radiation 40.0 43200 < th dose dependent rect. 23 1
108 85.03 atmosphere 1015.0 1440 < th dose independent rect. 3 1
110 85.21 precipitation 0.1 720 < th dose independent rect. 23 16
112 85.21 precipitation 0.1 720 < th dose dependent rect. 23 16
113 85.25 atmosphere 1015.0 720 < th dose independent rect. 3 8
114 85.27 temperature 15.0 1440 > th dose independent rect. 3 1
116 85.39 radiation 30.0 4320 < th dose dependent rect. 23 1
120 85.45 temperature 25.0 30 > th dose independent rect. 22 1
121 85.46 wind 9.0 1440 < th dose independent rect. 23 1
122 85.46 temperature 10.0 1440 > th dose independent rect. 23 1
125 85.46 temperature 30.0 1440 < th dose independent rect. 23 1
129 85.46 humidity 50.0 1440 > th dose independent rect. 23 1
139 85.46 atmosphere 995.0 1440 > th dose independent rect. 23 1
140 85.46 radiation 1.0 1440 < th dose independent rect. 23 1
160 85.46 temperature 10.0 1440 > th dose independent rect. 24 23
163 85.46 radiation 1.0 1440 < th dose dependent rect. 23 1
168 85.47 wind 3.0 30 < th dose independent rect. 22 1
171 85.52 temperature 20.0 30 > th dose dependent rect. 22 1
172 85.53 humidity 80.0 30 > th dose independent rect. 22 1
173 85.53 atmosphere 1005.0 30 > th dose dependent rect. 22 1
176 85.56 humidity 90.0 30 < th dose independent rect. 22 1
178 85.59 wind 5.0 30 < th dose dependent rect. 22 1
184 85.63 wind 1.0 30 > th dose independent rect. 22 1
191 85.69 temperature 10.0 30 > th dose independent rect. 22 1
193 85.69 temperature 30.0 30 < th dose independent rect. 22 1
194 85.69 humidity 50.0 30 > th dose independent rect. 22 1
197 85.69 atmosphere 995.0 30 > th dose independent rect. 22 1
198 85.69 atmosphere 1010.0 30 < th dose independent rect. 22 1
200 85.69 radiation 1.0 30 < th dose independent rect. 22 1
205 85.69 precipitation 0.1 30 < th dose independent rect. 22 1
206 85.69 temperature 10.0 30 > th dose independent rect. 23 23
207 85.69 radiation 1.0 30 < th dose dependent rect. 22 1
212 85.69 precipitation 0.1 30 < th dose dependent rect. 22 1
213 85.70 atmosphere 1005.0 30 > th dose independent rect. 22 1
214 85.71 humidity 50.0 30 > th dose dependent rect. 22 1
221 85.85 wind 9.0 30 < th dose independent rect. 23 23
223 85.89 atmosphere 1015.0 30 < th dose dependent rect. 22 1
224 85.95 atmosphere 995.0 30 > th dose independent rect. 3 23
225 85.97 humidity 90.0 30 < th dose dependent rect. 22 1
230 86.03 precipitation 0.1 720 < th dose independent rect. 3 8
231 86.03 precipitation 0.1 720 < th dose dependent rect. 3 8
232 86.07 temperature 15.0 720 > th dose independent rect. 11 16
235 86.13 wind 9.0 720 < th dose independent rect. 3 8
237 86.17 wind 1.0 30 > th dose dependent rect. 22 1
240 86.26 temperature 30.0 30 < th dose dependent rect. 22 1
241 86.31 temperature 15.0 720 > th dose independent rect. 3 8
249 86.57 humidity 50.0 43200 > th dose independent rect. 3 1
257 86.66 temperature 15.0 720 > th dose independent rect. 23 16
262 86.70 atmosphere 995.0 720 > th dose independent rect. 3 8
264 86.73 humidity 50.0 720 > th dose independent rect. 3 8
292 86.93 temperature 10.0 720 > th dose independent rect. 15 8
295 86.96 wind 9.0 1440 < th dose independent rect. 3 1
299 86.96 temperature 30.0 1440 < th dose independent rect. 3 1
303 86.96 humidity 50.0 1440 > th dose independent rect. 3 1
312 86.96 atmosphere 995.0 1440 > th dose independent rect. 3 1
313 86.96 radiation 1.0 1440 < th dose independent rect. 3 1
333 86.96 temperature 10.0 1440 > th dose independent rect. 4 23
336 86.96 radiation 1.0 1440 < th dose dependent rect. 3 1
354 87.05 precipitation 0.1 720 < th dose independent rect. 15 8
355 87.05 precipitation 0.1 720 < th dose dependent rect. 15 8
357 87.07 precipitation 0.1 30 < th dose independent rect. 3 23
359 87.07 precipitation 0.1 30 < th dose dependent rect. 3 23
361 87.13 atmosphere 1010.0 30 < th dose independent rect. 3 23
367 87.23 humidity 50.0 720 > th dose independent rect. 23 16
369 87.24 temperature 10.0 30 > th dose dependent rect. 3 23
378 87.33 precipitation 0.1 30 < th dose independent rect. 23 23
379 87.33 precipitation 0.1 30 < th dose dependent rect. 23 23
382 87.45 atmosphere 995.0 720 > th dose independent rect. 23 16
394 87.69 atmosphere 995.0 720 > th dose independent rect. 11 16
395 87.71 temperature 10.0 30 > th dose dependent rect. 23 23
401 87.80 wind 9.0 720 < th dose independent rect. 23 16
409 87.87 atmosphere 995.0 720 > th dose independent rect. 15 8
410 87.89 atmosphere 995.0 30 > th dose independent rect. 23 23
412 87.94 radiation 20.0 30 < th dose dependent rect. 3 23
413 87.95 radiation 10.0 30 < th dose independent rect. 3 23
414 87.98 temperature 15.0 1440 > th dose independent rect. 22 6
415 87.99 wind 9.0 720 < th dose independent rect. 15 8
421 88.07 temperature 10.0 90 > th dose dependent rect. 3 18
422 88.08 wind 1.0 30 < th dose independent rect. 24 3
430 88.14 radiation 40.0 720 < th dose independent rect. 15 8
434 88.17 humidity 90.0 90 < th dose independent rect. 2 1
440 88.20 temperature 10.0 10 > th dose dependent rect. 4 18
445 88.22 precipitation 0.1 720 < th dose independent rect. 11 16
446 88.22 precipitation 0.1 720 < th dose dependent rect. 11 16
479 88.46 wind 7.0 90 < th dose independent rect. 3 18
490 88.49 temperature 15.0 720 > th dose independent rect. 7 8
492 88.50 wind 1.0 720 > th dose independent rect. 15 8
495 88.53 temperature 15.0 90 > th dose independent rect. 3 18
515 88.69 atmosphere 1015.0 720 < th dose independent rect. 23 16
517 88.70 wind 5.0 10 < th dose dependent rect. 20 8
530 88.79 wind 7.0 10 < th dose independent rect. 4 18
543 88.84 humidity 50.0 30 > th dose independent rect. 3 23
547 88.88 wind 5.0 90 < th dose independent rect. 21 6
550 88.89 precipitation 0.1 1440 < th dose independent rect. 23 1
553 88.89 precipitation 0.1 1440 < th dose dependent rect. 23 1
555 88.91 temperature 15.0 1440 > th dose independent rect. 8 20
557 88.92 humidity 50.0 43200 > th dose independent rect. 22 6
564 88.94 temperature 15.0 1440 > th dose independent rect. 10 18
577 88.98 temperature 15.0 720 > th dose independent rect. 3 17
600 89.08 atmosphere 1010.0 90 < th dose independent rect. 3 18
604 89.10 atmosphere 995.0 10 > th dose dependent rect. 22 6
614 89.14 wind 9.0 30 < th dose dependent rect. 3 23
619 89.17 temperature 15.0 1440 > th dose independent rect. 8 11
624 89.19 atmosphere 1015.0 90 < th dose independent rect. 21 6
634 89.23 atmosphere 995.0 90 > th dose independent rect. 3 18
638 89.24 temperature 15.0 720 > th dose independent rect. 15 16
644 89.26 wind 5.0 10 < th dose independent rect. 22 6
648 89.28 temperature 15.0 1440 > th dose independent rect. 15 13
657 89.29 atmosphere 995.0 10 > th dose dependent rect. 4 7
660 89.30 radiation 30.0 10 < th dose independent rect. 4 7
667 89.32 atmosphere 1015.0 1440 < th dose independent rect. 24 4
671 89.32 temperature 15.0 720 > th dose independent rect. 1 16
672 89.32 radiation 10.0 30 < th dose independent rect. 23 23
674 89.32 temperature 10.0 90 > th dose dependent rect. 3 8
682 89.34 atmosphere 1015.0 10 < th dose independent rect. 22 6
684 89.34 atmosphere 1010.0 30 < th dose independent rect. 23 23
688 89.35 temperature 15.0 90 > th dose independent rect. 23 12
693 89.35 wind 9.0 10 < th dose dependent rect. 4 16
696 89.37 temperature 15.0 720 > th dose independent rect. 5 8
703 89.38 humidity 50.0 90 > th dose dependent rect. 21 6
717 89.41 precipitation 0.1 720 < th dose independent rect. 3 16
719 89.41 precipitation 0.1 720 < th dose dependent rect. 3 16
720 89.42 temperature 25.0 10 > th dose independent rect. 24 11
722 89.42 wind 9.0 90 < th dose dependent rect. 3 18
724 89.43 temperature 15.0 1440 > th dose independent rect. 10 9
738 89.45 humidity 60.0 10 > th dose dependent rect. 22 6
754 89.48 atmosphere 995.0 10 > th dose independent rect. 4 18
755 89.48 atmosphere 1010.0 10 < th dose independent rect. 4 18
759 89.49 temperature 15.0 90 > th dose independent rect. 3 8
760 89.49 temperature 15.0 1440 > th dose independent rect. 23 19
771 89.51 precipitation 0.1 90 < th dose independent rect. 21 6
774 89.51 precipitation 0.1 90 < th dose dependent rect. 21 6
780 89.52 radiation 40.0 10 < th dose dependent rect. 4 7
781 89.53 temperature 10.0 90 > th dose independent rect. 21 6
782 89.53 temperature 30.0 90 < th dose independent rect. 21 6
783 89.53 humidity 50.0 90 > th dose independent rect. 21 6
786 89.53 humidity 80.0 10 > th dose independent rect. 22 6
787 89.53 atmosphere 995.0 90 > th dose independent rect. 21 6
788 89.53 radiation 1.0 90 < th dose independent rect. 21 6
793 89.53 wind 7.0 90 < th dose independent rect. 3 8
796 89.53 wind 1.0 30 > th dose dependent rect. 2 1
797 89.53 radiation 1.0 90 < th dose dependent rect. 21 6
804 89.54 temperature 15.0 1440 > th dose independent rect. 8 5
805 89.54 precipitation 0.1 10 < th dose independent rect. 22 6
808 89.54 precipitation 0.1 10 < th dose dependent rect. 22 6
811 89.55 atmosphere 1015.0 720 < th dose independent rect. 1 16
815 89.56 temperature 15.0 1440 > th dose independent rect. 10 3
820 89.56 temperature 20.0 720 > th dose dependent rect. 3 1
860 89.61 wind 1.0 10 < th dose independent rect. 14 13
880 89.63 temperature 30.0 1440 < th dose independent rect. 23 5
884 89.63 humidity 50.0 1440 > th dose independent rect. 23 5
893 89.63 atmosphere 995.0 1440 > th dose independent rect. 23 5
894 89.63 radiation 1.0 1440 < th dose independent rect. 23 5
918 89.63 precipitation 0.1 720 > th dose independent rect. 4 14
921 89.63 precipitation 0.1 720 < th dose independent rect. 13 16
923 89.63 temperature 10.0 1440 > th dose independent rect. 4 19
927 89.63 radiation 1.0 1440 < th dose dependent rect. 23 5
933 89.63 wind 3.0 30 < th dose dependent rect. 16 11
934 89.63 precipitation 0.1 720 < th dose dependent rect. 13 16
937 89.64 temperature 25.0 90 > th dose independent rect. 21 6
940 89.64 radiation 40.0 90 < th dose independent rect. 11 16
949 89.65 wind 1.0 10 < th dose independent rect. 17 10
961 89.67 precipitation 0.1 720 < th dose independent sin 1 NA
962 89.67 temperature 15.0 4320 > th dose independent rect. 7 1
968 89.67 precipitation 0.1 720 < th dose dependent sin 1 NA
979 89.68 precipitation 0.1 720 > th dose dependent rect. 4 15
985 89.70 precipitation 0.1 720 > th dose independent sin 1 NA
988 89.70 temperature 10.0 10 > th dose independent rect. 22 6
989 89.70 temperature 30.0 10 < th dose independent rect. 22 6
990 89.70 humidity 50.0 10 > th dose independent rect. 22 6
993 89.70 atmosphere 995.0 10 > th dose independent rect. 22 6
994 89.70 radiation 1.0 10 < th dose independent rect. 22 6
999 89.70 atmosphere 1000.0 10 > th dose independent rect. 4 7
1000 89.70 temperature 10.0 10 > th dose independent rect. 4 18