Os04g0604600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0604600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.35 | 0.246 | 10.1 | 0.22 | 0.574 | -0.565 | 0.585 | -0.103 | 0.24 | 4.62 | 1012 | 6690 | -- | -- |
| 27.38 | 0.244 | 10.2 | 0.199 | 0.574 | -0.555 | 0.588 | -- | 0.235 | 4.6 | 1012 | 6691 | -- | -- |
| 27.65 | 0.245 | 10.1 | 0.254 | 0.584 | -0.507 | -- | -0.144 | 0.233 | 4.73 | 1013 | 9974 | -- | -- |
| 27.65 | 0.245 | 10.2 | 0.216 | 0.58 | -0.505 | -- | -- | 0.226 | 4.64 | 1013 | 9996 | -- | -- |
| 45.41 | 0.314 | 10.2 | 0.282 | -- | -0.521 | -- | -0.168 | 0.248 | -- | 1012 | 9857 | -- | -- |
| 36.47 | 0.283 | 10.1 | 0.452 | 0.583 | -- | 0.554 | -- | 0.36 | 4.63 | -- | -- | -- | -- |
| 37.28 | 0.286 | 10.1 | 0.449 | 0.586 | -- | -- | -- | 0.357 | 4.63 | -- | -- | -- | -- |
| 45.51 | 0.314 | 10.2 | 0.231 | -- | -0.512 | -- | -- | 0.237 | -- | 1012 | 9870 | -- | -- |
| 28.71 | 0.25 | 10.2 | -- | 0.576 | -0.561 | -- | -- | 0.192 | 4.62 | 1013 | 9856 | -- | -- |
| 55.55 | 0.348 | 10.1 | 0.471 | -- | -- | -- | -- | 0.373 | -- | -- | -- | -- | -- |
| 42.59 | 0.305 | 10.1 | -- | 0.594 | -- | -- | -- | 0.307 | 4.61 | -- | -- | -- | -- |
| 46.34 | 0.317 | 10.2 | -- | -- | -0.753 | -- | -- | 0.182 | -- | 1012 | 36536 | -- | -- |
| 61.41 | 0.366 | 10.1 | -- | -- | -- | -- | -- | 0.32 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.10 | wind | 9.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 2 | 27.35 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 18 | 20 |
| 4 | 27.37 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 20 | 27.38 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 32 | 27.39 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 37 | 27.42 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 39 | 27.43 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 112 | 27.61 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 4 | 16 |
| 119 | 27.61 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 121 | 27.62 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 123 | 27.62 | humidity | 50.0 | 43200 | < th | dose dependent | no | NA | NA |
| 124 | 27.62 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 127 | 27.62 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 8 | 12 |
| 152 | 27.62 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 8 | 21 |
| 159 | 27.62 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 6 | 22 |
| 179 | 27.63 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 180 | 27.63 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 244 | 27.65 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 18 | 20 |
| 256 | 27.67 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 263 | 27.67 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 280 | 27.68 | humidity | 50.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 295 | 27.69 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 296 | 27.69 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 310 | 27.70 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 332 | 27.72 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 333 | 27.73 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 347 | 27.74 | humidity | 50.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 348 | 27.74 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 349 | 27.74 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 383 | 27.76 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 394 | 27.77 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 416 | 27.79 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 421 | 27.79 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 23 | 10 |
| 436 | 27.80 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 458 | 27.81 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 517 | 27.84 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 518 | 27.84 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 566 | 27.86 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 587 | 27.87 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 620 | 27.88 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 629 | 27.89 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 739 | 27.94 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 750 | 27.95 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 761 | 27.96 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 784 | 27.96 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 802 | 27.97 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 828 | 27.98 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 830 | 27.98 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 854 | 27.98 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 18 | 7 |
| 856 | 27.98 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 886 | 28.00 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 887 | 28.00 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 907 | 28.01 | wind | 9.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 928 | 28.02 | atmosphere | 1015.0 | 43200 | < th | dose independent | sin | 3 | NA |