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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0604400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant MuDR transposase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.58 (0.0511) R2 : 0.468
β1 : -2.7 (0.196) R2dD : 0.254 R2D : 0.335
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.866 (0.172) R2dE : 0.0329 R2E : 0.0461
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.916 (0.11) R2dN8 : 0.111 R2N8 : 0.13
σ : 0.953
deviance : 418.99
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24
memory length : 3309
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
406.37 0.947 5.56 -2.56 0.13 -0.937 1.97 0.495 0.925 3.71 24.7 3322 -- --
406.31 0.939 5.57 -2.67 0.127 -0.883 1.96 -- 0.926 3.67 24.1 3266 -- --
417.58 0.952 5.56 -2.52 0.164 -0.909 -- 0.767 0.942 5.49 24.41 3289 -- --
417.47 0.952 5.57 -2.69 0.191 -0.847 -- -- 0.916 6.01 24 3234 -- --
418.96 0.953 5.56 -2.53 -- -0.937 -- 0.658 0.952 -- 24.16 3321 -- --
430.82 0.973 5.59 -2.98 0.0888 -- 1.91 -- 0.829 3.77 -- -- -- --
440.38 0.983 5.59 -3 0.188 -- -- -- 0.818 7.29 -- -- -- --
418.99 0.953 5.58 -2.7 -- -0.866 -- -- 0.916 -- 24 3309 -- --
437.54 0.974 5.35 -- 0.19 -2.47 -- -- 1.91 6.24 12.96 47520 -- --
442.25 0.983 5.6 -3 -- -- -- -- 0.821 -- -- -- -- --
678.2 1.22 5.52 -- 0.167 -- -- -- 1.15 8.49 -- -- -- --
439.41 0.976 5.35 -- -- -2.46 -- -- 1.91 -- 12.9 47520 -- --
679.75 1.22 5.52 -- -- -- -- -- 1.15 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 392.23 temperature 25.0 1440 < th dose independent rect. 22 11
3 392.74 temperature 25.0 1440 < th dose independent rect. 3 5
5 392.96 temperature 25.0 1440 > th dose independent rect. 22 11
11 393.37 temperature 25.0 1440 > th dose independent rect. 3 5
12 393.46 temperature 25.0 1440 > th dose independent rect. 1 7
22 394.32 temperature 25.0 1440 > th dose dependent rect. 24 8
25 394.66 radiation 40.0 4320 > th dose independent rect. 7 3
43 394.71 temperature 25.0 1440 > th dose dependent rect. 4 3
122 396.70 radiation 40.0 4320 > th dose independent sin 11 NA
186 398.60 radiation 40.0 4320 < th dose independent rect. 4 7
187 398.60 radiation 40.0 4320 < th dose independent rect. 2 9
190 398.62 radiation 40.0 4320 < th dose independent rect. 18 17
192 398.63 radiation 40.0 4320 < th dose independent rect. 6 5
197 398.69 radiation 40.0 4320 < th dose independent rect. 22 13
213 398.99 radiation 30.0 4320 > th dose dependent rect. 7 4
221 398.99 humidity 80.0 4320 < th dose dependent rect. 21 11
240 399.16 temperature 25.0 4320 < th dose independent rect. 22 2
263 399.40 temperature 25.0 4320 > th dose independent rect. 22 1
267 399.43 humidity 90.0 4320 < th dose dependent rect. 2 3
286 399.47 temperature 25.0 1440 < th dose independent sin 8 NA
290 399.51 temperature 25.0 4320 < th dose independent rect. 21 5
302 399.65 wind 1.0 43200 < th dose dependent rect. 16 5
303 399.66 radiation 40.0 1440 > th dose dependent rect. 10 1
305 399.70 temperature 25.0 1440 > th dose independent sin 8 NA
311 399.76 wind 7.0 43200 > th dose dependent rect. 5 7
321 399.91 humidity 80.0 4320 < th dose independent rect. 21 9
327 399.98 humidity 80.0 4320 > th dose independent rect. 3 1
343 400.08 humidity 80.0 4320 < th dose independent rect. 3 1
346 400.13 humidity 80.0 4320 < th dose independent rect. 20 11
354 400.20 wind 9.0 43200 > th dose independent rect. 10 3
362 400.23 temperature 25.0 4320 > th dose independent rect. 21 5
369 400.32 temperature 20.0 90 > th dose dependent rect. 2 7
372 400.40 radiation 30.0 4320 > th dose dependent sin 11 NA
382 400.50 humidity 80.0 4320 < th dose independent rect. 2 3
412 400.58 wind 9.0 43200 < th dose independent rect. 10 3
453 400.93 wind 9.0 1440 < th dose independent rect. 3 7
461 400.98 radiation 40.0 4320 < th dose independent sin 10 NA
483 401.01 radiation 20.0 4320 > th dose independent rect. 16 16
504 401.04 wind 9.0 43200 < th dose independent rect. 7 5
516 401.12 wind 9.0 43200 < th dose independent rect. 5 8
530 401.17 wind 9.0 43200 > th dose independent rect. 8 4
533 401.18 precipitation 0.1 43200 < th dose independent rect. 8 1
536 401.18 precipitation 0.1 43200 < th dose dependent rect. 8 1
588 401.33 wind 9.0 43200 > th dose independent rect. 5 8
600 401.36 wind 9.0 43200 < th dose independent rect. 23 14
612 401.41 precipitation 0.1 43200 > th dose independent rect. 8 1
613 401.41 precipitation 0.1 43200 > th dose dependent rect. 8 1
616 401.42 temperature 25.0 4320 > th dose dependent rect. 19 7
642 401.57 radiation 1.0 4320 > th dose independent rect. 18 11
643 401.57 wind 9.0 43200 > th dose independent rect. 23 14
651 401.62 wind 9.0 43200 > th dose independent rect. 2 11
708 401.88 radiation 1.0 4320 > th dose independent rect. 18 1
724 401.91 precipitation 0.1 43200 > th dose dependent rect. 6 3
737 401.95 precipitation 0.1 43200 > th dose independent rect. 6 3
751 402.01 precipitation 0.1 43200 > th dose independent rect. 6 1
753 402.01 precipitation 0.1 43200 > th dose dependent rect. 6 1
767 402.06 wind 7.0 43200 > th dose dependent rect. 23 14
779 402.11 wind 9.0 43200 < th dose independent sin 7 NA
800 402.19 temperature 30.0 270 < th dose independent rect. 10 23
848 402.39 wind 9.0 43200 > th dose independent sin 7 NA
861 402.45 precipitation 0.1 43200 < th dose independent rect. 5 6
863 402.45 precipitation 0.1 43200 < th dose dependent rect. 5 6
868 402.50 wind 9.0 43200 > th dose independent rect. 20 16
887 402.57 precipitation 0.1 43200 > th dose dependent rect. 4 8
888 402.58 precipitation 0.1 43200 > th dose independent rect. 4 8
889 402.58 precipitation 0.1 43200 < th dose independent rect. 4 8
893 402.58 precipitation 0.1 43200 < th dose dependent rect. 4 8
899 402.60 precipitation 0.1 43200 > th dose independent rect. 5 6
937 402.67 temperature 25.0 4320 > th dose independent rect. 8 1
941 402.67 precipitation 0.1 43200 > th dose dependent rect. 5 6
988 402.87 wind 9.0 43200 < th dose independent rect. 20 16
991 402.88 wind 1.0 270 < th dose dependent rect. 22 1