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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0604300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Xyloglucan endotransglucosylase/hydrolase protein 24 precursor (EC 2.4.1.207) (At-XTH24) (XTH-24) (Meristem protein 5) (MERI-5 protein) (MERI5 protein) (Endo-xyloglucan transferase) (Xyloglucan endo-1,4-beta-D-glucanase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.45 (0.0606) R2 : 0.137
β1 : -0.887 (0.221) R2dD : 0.032 R2D : 0.0239
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.11 (0.149) R2dE : 0.107 R2E : 0.106
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.118 (0.131) R2dN8 : 0.00216 R2N8 : 0.00247
σ : 1.13
deviance : 589.6
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.8
memory length : 8
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.92
open length of G : 7.03

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
579.63 1.13 3.45 -0.939 0.283 0.981 -0.145 -1.46 -0.152 2.49 24.78 9 2.61 6.97
583.26 1.12 3.45 -0.912 0.295 0.988 -0.776 -- -0.134 2.48 24.7 8 2.92 7.05
577.07 1.12 3.45 -0.918 0.292 1.04 -- -1.62 -0.137 2.46 24.8 8 2.92 6.98
585.26 1.13 3.45 -0.894 0.295 1.01 -- -- -0.124 1.82 24.7 8 2.92 7.02
581.16 1.12 3.45 -0.919 -- 1.16 -- -1.57 -0.133 -- 24.8 8 2.92 6.98
622.34 1.17 3.46 -0.918 0.841 -- -0.644 -- -0.276 4.26 -- -- -- --
623.49 1.17 3.46 -0.912 0.838 -- -- -- -0.273 4.29 -- -- -- --
589.6 1.13 3.45 -0.887 -- 1.11 -- -- -0.118 -- 24.8 8 2.92 7.03
606.42 1.15 3.45 -- 0.288 0.999 -- -- -0.0427 1.71 24.7 8 2.92 7.03
661.34 1.2 3.47 -0.879 -- -- -- -- -0.251 -- -- -- -- --
645.41 1.19 3.44 -- 0.821 -- -- -- -0.171 4.31 -- -- -- --
610.68 1.15 3.45 -- -- 1.09 -- -- -0.0419 -- 24.72 8 2.91 7.05
681.7 1.22 3.44 -- -- -- -- -- -0.153 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 582.14 temperature 25.0 10 < th dose independent rect. 2 7
10 587.25 temperature 25.0 10 < th dose independent rect. 3 16
35 592.81 humidity 90.0 90 > th dose independent rect. 6 1
61 595.97 humidity 90.0 90 > th dose independent rect. 2 6
63 596.26 humidity 90.0 10 > th dose independent rect. 2 7
90 597.75 temperature 30.0 90 < th dose dependent rect. 2 7
96 598.09 temperature 25.0 10 > th dose independent rect. 1 15
109 598.44 temperature 25.0 10 < th dose independent sin 3 NA
112 598.48 humidity 90.0 10 > th dose independent rect. 7 1
121 598.74 atmosphere 1010.0 10 < th dose independent rect. 2 7
139 599.10 temperature 20.0 90 < th dose dependent rect. 2 3
147 599.22 humidity 80.0 90 > th dose dependent rect. 7 1
165 599.59 humidity 90.0 10 < th dose independent rect. 1 14
181 600.01 temperature 25.0 270 < th dose independent rect. 22 1
196 600.30 temperature 25.0 10 > th dose independent sin 3 NA
205 600.43 radiation 1.0 90 < th dose independent rect. 6 1
208 600.62 precipitation 0.1 10 > th dose independent rect. 5 13
210 600.62 precipitation 0.1 10 > th dose dependent rect. 5 13
214 600.67 humidity 80.0 10 < th dose independent rect. 23 7
229 600.87 humidity 90.0 90 > th dose dependent rect. 2 6
245 601.00 humidity 90.0 90 > th dose dependent rect. 2 3
246 601.01 humidity 80.0 10 < th dose dependent rect. 1 6
249 601.05 humidity 70.0 720 > th dose independent rect. 19 1
252 601.09 wind 1.0 10 > th dose dependent rect. 7 1
261 601.20 wind 3.0 30 > th dose independent rect. 5 3
265 601.27 radiation 1.0 90 < th dose independent rect. 6 4
267 601.29 humidity 90.0 10 < th dose independent rect. 23 16
269 601.32 wind 7.0 10 < th dose independent rect. 10 16
281 601.39 wind 3.0 10 > th dose dependent rect. 5 3
312 601.63 humidity 90.0 10 > th dose independent sin 3 NA
330 601.71 temperature 15.0 10 > th dose independent rect. 10 16
339 601.91 precipitation 0.1 10 > th dose independent sin 22 NA
358 602.14 precipitation 0.1 270 > th dose dependent rect. 4 1
360 602.15 precipitation 0.1 270 > th dose independent rect. 4 1
385 602.31 wind 1.0 10 > th dose independent rect. 9 22
388 602.36 humidity 90.0 10 > th dose dependent rect. 2 7
402 602.47 humidity 90.0 90 > th dose dependent rect. 2 12
403 602.48 humidity 90.0 90 > th dose independent rect. 2 12
407 602.52 temperature 25.0 10 < th dose independent rect. 22 4
420 602.57 atmosphere 1000.0 30 > th dose independent rect. 2 7
431 602.63 humidity 90.0 10 > th dose dependent rect. 2 16
432 602.64 radiation 30.0 90 < th dose independent rect. 2 8
435 602.65 humidity 90.0 10 > th dose dependent rect. 2 12
448 602.73 humidity 60.0 720 > th dose independent rect. 18 8
451 602.74 humidity 50.0 10 > th dose dependent rect. 2 8
454 602.76 humidity 60.0 30 > th dose independent rect. 2 8
466 602.91 precipitation 0.1 270 > th dose independent rect. 4 3
467 602.91 humidity 50.0 90 > th dose dependent rect. 2 7
469 602.92 radiation 1.0 90 < th dose dependent rect. 6 1
470 602.92 precipitation 0.1 270 > th dose dependent rect. 4 3
482 603.03 precipitation 0.1 90 < th dose independent rect. 9 17
484 603.03 precipitation 0.1 90 < th dose dependent rect. 9 17
497 603.09 precipitation 0.1 10 > th dose dependent sin 22 NA
518 603.26 wind 9.0 30 < th dose dependent rect. 10 16
526 603.29 temperature 30.0 720 < th dose independent rect. 18 2
536 603.37 precipitation 0.1 270 > th dose independent rect. 23 8
542 603.40 precipitation 0.1 270 > th dose dependent rect. 23 8
545 603.42 precipitation 0.1 270 > th dose independent rect. 1 6
547 603.42 temperature 25.0 270 > th dose independent rect. 13 12
556 603.47 temperature 25.0 10 > th dose independent rect. 1 21
560 603.48 precipitation 0.1 270 > th dose dependent rect. 1 6
589 603.73 wind 7.0 90 < th dose independent rect. 2 7
610 603.82 temperature 30.0 4320 > th dose dependent rect. 18 1
627 603.83 precipitation 0.1 10 < th dose independent rect. 10 16
628 603.83 precipitation 0.1 10 < th dose dependent rect. 10 16
652 603.96 wind 7.0 10 < th dose independent rect. 2 8
667 604.03 temperature 30.0 720 < th dose independent rect. 18 8
669 604.05 wind 5.0 270 > th dose independent rect. 4 1
672 604.06 temperature 10.0 90 > th dose independent rect. 2 7
701 604.22 wind 1.0 10 > th dose independent rect. 23 8
704 604.23 wind 5.0 270 > th dose dependent rect. 4 1
724 604.33 temperature 15.0 30 > th dose independent rect. 23 3
747 604.42 atmosphere 1005.0 10 > th dose dependent rect. 5 1
749 604.43 precipitation 0.1 90 < th dose independent rect. 2 7
751 604.43 precipitation 0.1 90 < th dose dependent rect. 2 7
773 604.52 temperature 10.0 10 > th dose independent rect. 2 8
779 604.52 humidity 90.0 10 > th dose independent rect. 24 9
809 604.61 temperature 10.0 1440 > th dose independent rect. 3 8
812 604.61 atmosphere 995.0 1440 > th dose independent rect. 3 8
814 604.61 temperature 10.0 1440 > th dose independent rect. 11 16
824 604.64 humidity 90.0 90 > th dose dependent rect. 2 19
830 604.66 humidity 90.0 10 > th dose independent rect. 2 20
841 604.70 precipitation 0.1 10 < th dose independent sin 22 NA
845 604.70 precipitation 0.1 10 < th dose dependent sin 22 NA
846 604.71 humidity 90.0 90 > th dose independent rect. 2 3
866 604.84 atmosphere 1000.0 90 > th dose independent rect. 7 1
872 604.87 wind 9.0 90 < th dose independent rect. 8 23
881 604.90 temperature 15.0 30 > th dose independent rect. 23 15
886 604.91 humidity 90.0 90 > th dose dependent rect. 2 21
892 604.94 atmosphere 1000.0 30 < th dose dependent rect. 9 1
896 604.96 wind 1.0 10 > th dose independent rect. 20 11
929 605.12 humidity 90.0 90 > th dose independent sin 6 NA
930 605.12 temperature 20.0 270 < th dose independent rect. 3 1
934 605.12 temperature 30.0 90 < th dose dependent rect. 7 1
940 605.15 precipitation 0.1 90 < th dose independent rect. 8 23
941 605.15 precipitation 0.1 90 < th dose dependent rect. 8 23
955 605.19 temperature 25.0 270 > th dose dependent rect. 22 1
999 605.38 humidity 90.0 10 > th dose dependent rect. 2 20