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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0604200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Xyloglucan endotransglycosylase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.87 (0.0426) R2 : 0.596
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.6 (0.121) R2dC : 0.218 R2C : 0.421
β3 : 1.75 (0.156) R2dE : 0.17 R2E : 0.377
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0851 (0.0908) R2dN8 : 0.000757 R2N8 : 0.00419
σ : 0.798
deviance : 293.68
__
_____
C
peak time of C : 12.8
E
wheather : radiation
threshold : 19.25
memory length : 88
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.41
open length of G : 9.93

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
278.1 0.784 3.87 -0.355 1.56 1.71 1.17 -2.9 -0.0846 13 19.7 89 7.13 10.1
291.59 0.795 3.87 -0.265 1.5 1.71 -0.00856 -- -0.0762 12.6 19.78 88 7.27 10.2
280.66 0.78 3.87 -0.348 1.58 1.66 -- -2.04 -0.106 12.8 19.77 87 7.28 10.1
290.56 0.794 3.87 -0.323 1.58 1.66 -- -- -0.0958 12.7 19.77 88 7.35 10.1
340.44 0.859 3.94 -0.627 -- 2.19 -- -0.92 -0.301 -- 39.89 88 7.27 10.4
374.48 0.907 3.92 -0.46 2.33 -- -0.0727 -- -0.3 13.1 -- -- -- --
374.51 0.906 3.92 -0.463 2.33 -- -- -- -0.3 13.1 -- -- -- --
338.05 0.856 3.9 -0.611 -- 2.14 -- -- -0.216 -- 39.74 64 7.52 10.3
293.68 0.798 3.87 -- 1.6 1.75 -- -- -0.0851 12.8 19.25 88 7.41 9.93
711.63 1.25 3.96 -0.552 -- -- -- -- -0.347 -- -- -- -- --
380.15 0.912 3.91 -- 2.34 -- -- -- -0.249 13.1 -- -- -- --
345.54 0.866 3.9 -- -- 2.15 -- -- -0.104 -- 39.31 56 7.57 10.2
719.67 1.25 3.94 -- -- -- -- -- -0.285 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 282.40 radiation 20 90 < th dose independent rect. 7 10
2 283.69 radiation 20 90 < th dose dependent rect. 7 10
5 289.68 radiation 20 90 < th dose independent rect. 19 23
17 296.83 radiation 40 90 < th dose dependent rect. 19 23
24 298.69 radiation 20 270 < th dose independent rect. 21 18
26 299.05 temperature 20 720 > th dose independent rect. 6 1
44 303.01 radiation 40 270 < th dose dependent rect. 20 21
62 306.21 radiation 40 270 < th dose dependent rect. 21 18
82 308.13 radiation 20 90 < th dose independent rect. 7 23
98 309.03 radiation 20 90 < th dose independent rect. 11 6
103 309.24 temperature 20 720 > th dose independent rect. 5 3
113 310.13 radiation 20 90 < th dose independent sin 0 NA
123 310.68 wind 1 43200 < th dose dependent rect. 2 1
148 311.95 radiation 30 4320 < th dose independent rect. 7 1
151 312.15 radiation 20 90 < th dose independent no NA NA
159 312.70 wind 1 43200 > th dose independent rect. 2 1
164 313.07 wind 1 43200 < th dose independent rect. 2 1
170 313.65 temperature 20 720 < th dose independent rect. 6 1
176 313.86 radiation 30 4320 < th dose independent rect. 23 9
182 314.13 radiation 30 4320 < th dose independent rect. 21 11
193 314.43 radiation 30 4320 < th dose independent rect. 5 3
197 314.49 radiation 30 4320 < th dose independent rect. 17 15
199 314.58 radiation 30 4320 < th dose independent rect. 3 5
209 314.73 wind 9 43200 < th dose independent rect. 24 3
222 315.21 radiation 10 43200 > th dose independent rect. 17 1
234 315.25 temperature 20 720 < th dose dependent rect. 2 1
261 315.87 temperature 20 1440 > th dose independent rect. 22 1
274 316.25 radiation 20 720 < th dose independent rect. 4 9
276 316.35 temperature 20 1440 < th dose independent rect. 22 1
284 316.51 radiation 20 90 < th dose independent rect. 15 23
292 316.82 radiation 20 4320 > th dose dependent rect. 7 1
301 316.93 radiation 20 90 < th dose independent rect. 7 20
318 317.21 humidity 80 14400 > th dose dependent rect. 24 1
319 317.22 radiation 1 720 > th dose dependent rect. 7 5
322 317.41 radiation 20 90 < th dose independent rect. 11 23
323 317.45 radiation 20 270 < th dose independent rect. 11 2
328 317.54 radiation 40 43200 < th dose independent rect. 15 18
396 318.22 radiation 1 720 > th dose dependent rect. 18 18
399 318.25 atmosphere 995 43200 < th dose dependent rect. 14 1
415 318.43 radiation 10 43200 < th dose independent rect. 17 6
419 318.46 radiation 10 43200 < th dose independent rect. 17 4
422 318.47 wind 9 43200 > th dose dependent rect. 10 5
443 318.78 temperature 10 43200 < th dose dependent rect. 3 2
459 319.05 wind 9 43200 > th dose independent rect. 4 11
462 319.09 radiation 30 4320 > th dose dependent rect. 16 17
469 319.19 wind 9 43200 > th dose dependent rect. 22 5
476 319.25 wind 9 43200 < th dose independent rect. 4 11
479 319.28 radiation 40 43200 < th dose independent rect. 4 5
482 319.30 radiation 40 43200 < th dose independent rect. 19 14
485 319.32 radiation 40 43200 < th dose independent rect. 6 3
501 319.42 wind 9 43200 > th dose independent rect. 23 16
520 319.48 radiation 40 43200 < th dose independent rect. 22 11
531 319.54 wind 9 43200 > th dose independent rect. 18 21
537 319.56 atmosphere 995 43200 < th dose independent rect. 12 1
551 319.65 atmosphere 995 43200 > th dose independent rect. 13 1
555 319.69 wind 9 43200 > th dose dependent rect. 22 2
560 319.72 wind 9 43200 < th dose independent rect. 23 16
561 319.72 humidity 80 14400 > th dose dependent rect. 22 8
574 319.85 wind 9 43200 < th dose independent rect. 18 21
601 319.95 wind 9 43200 > th dose dependent rect. 10 22
612 320.01 humidity 50 43200 > th dose independent rect. 21 6
622 320.12 temperature 10 43200 < th dose independent rect. 4 1
633 320.22 radiation 20 90 < th dose independent rect. 13 23
644 320.27 wind 9 43200 > th dose dependent rect. 9 12
648 320.29 wind 9 43200 > th dose dependent rect. 9 14
653 320.33 humidity 80 14400 > th dose dependent rect. 22 5
655 320.34 wind 7 43200 > th dose dependent rect. 7 7
666 320.39 wind 7 43200 > th dose dependent rect. 5 9
667 320.39 wind 7 43200 > th dose dependent rect. 4 11
692 320.47 wind 9 43200 > th dose dependent sin 20 NA
699 320.50 wind 9 43200 > th dose dependent rect. 9 9
722 320.57 wind 9 43200 > th dose independent sin 3 NA
742 320.66 wind 9 43200 < th dose independent sin 4 NA
755 320.73 temperature 10 43200 > th dose independent rect. 4 1
783 320.92 wind 7 43200 > th dose independent rect. 23 4
823 321.09 radiation 20 270 < th dose dependent rect. 11 2
828 321.10 radiation 40 43200 > th dose dependent rect. 7 2
859 321.18 wind 9 43200 > th dose dependent rect. 18 8
865 321.21 wind 9 43200 > th dose dependent rect. 18 6
869 321.23 radiation 30 43200 < th dose independent rect. 16 7
908 321.38 radiation 30 43200 < th dose independent rect. 16 5
913 321.39 humidity 90 14400 > th dose dependent rect. 20 12
922 321.43 humidity 60 43200 > th dose independent rect. 22 1
931 321.46 wind 7 43200 > th dose dependent rect. 19 19
935 321.49 wind 9 43200 > th dose independent rect. 19 7
965 321.60 wind 7 43200 > th dose dependent sin 3 NA
978 321.69 radiation 30 43200 < th dose independent rect. 16 1
990 321.76 wind 9 43200 > th dose independent rect. 13 22
991 321.77 wind 7 43200 > th dose independent rect. 7 1
1000 321.81 wind 7 43200 < th dose independent rect. 7 1