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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0604000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Actin filament bundling protein P-115-ABP.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0303) R2 : 0.275
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.18 (0.167) R2dE : 0.279 R2E : 0.274
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0393 (0.0646) R2dN8 : 0.000743 R2N8 : -0.00419
σ : 0.566
deviance : 147.89
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C
peak time of C : --
E
wheather : radiation
threshold : 20
memory length : 84
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.53
open length of G : 7.05

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
132.23 0.54 2.99 -0.0683 0.269 2.57 0.728 -6.44 0.0145 13.1 12.88 83 9.07 6.19
146.53 0.564 3 -0.0904 0.257 2.13 0.0981 -- 0.0119 13.1 16.88 77 8.75 6.7
134.07 0.539 2.99 -0.0648 0.259 2.55 -- -5.75 0.0135 12.8 12.67 84 9.03 6.24
146.17 0.563 3 -0.0573 0.208 2.12 -- -- 0.024 13 18.47 84 8.68 6.82
138.06 0.547 2.98 -0.0375 -- 2.7 -- -5.47 0.0455 -- 13.54 83 9.03 6.3
183.57 0.635 3.03 -0.197 0.537 -- -0.0636 -- -0.129 13 -- -- -- --
183.59 0.635 3.03 -0.199 0.537 -- -- -- -0.129 13 -- -- -- --
147.81 0.566 3 -0.0661 -- 2.18 -- -- 0.0311 -- 20 84 8.67 6.92
146.13 0.563 3 -- 0.195 2.02 -- -- 0.0289 13.1 19.17 84 8.6 6.97
201.52 0.663 3.04 -0.219 -- -- -- -- -0.14 -- -- -- -- --
184.63 0.636 3.02 -- 0.54 -- -- -- -0.107 13 -- -- -- --
147.89 0.566 3 -- -- 2.18 -- -- 0.0393 -- 20 84 8.53 7.05
202.79 0.665 3.03 -- -- -- -- -- -0.115 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 136.52 radiation 10 90 < th dose dependent rect. 9 6
2 138.24 radiation 20 90 < th dose dependent rect. 8 9
8 139.75 radiation 10 90 < th dose independent rect. 8 9
12 141.20 radiation 10 90 < th dose independent rect. 9 6
23 143.46 radiation 20 270 < th dose dependent rect. 11 2
31 144.72 radiation 20 90 < th dose dependent rect. 11 4
32 145.76 radiation 10 90 < th dose independent rect. 11 4
33 145.80 radiation 20 90 < th dose dependent rect. 19 23
36 146.40 radiation 10 10 < th dose dependent rect. 8 7
46 147.79 radiation 10 90 < th dose independent rect. 11 6
106 151.53 radiation 20 90 < th dose dependent rect. 7 23
134 152.98 radiation 10 90 < th dose independent rect. 13 2
143 153.25 radiation 20 90 < th dose dependent rect. 17 23
148 153.46 radiation 20 90 < th dose dependent no NA NA
162 154.03 radiation 20 90 < th dose independent rect. 19 23
163 154.07 radiation 20 90 < th dose independent rect. 7 23
189 154.81 radiation 10 90 < th dose dependent rect. 13 2
209 155.16 radiation 20 90 < th dose dependent rect. 11 23
217 155.45 radiation 20 90 < th dose dependent sin 0 NA
220 155.48 radiation 20 270 < th dose independent rect. 22 17
232 155.83 radiation 20 90 < th dose dependent rect. 15 23
284 156.65 radiation 10 10 < th dose dependent rect. 13 2
286 156.69 radiation 20 1440 < th dose dependent rect. 11 1
340 157.24 radiation 20 90 < th dose dependent rect. 4 23
396 158.05 radiation 10 90 > th dose independent sin 1 NA
405 158.11 radiation 20 90 < th dose independent no NA NA
408 158.13 radiation 20 90 < th dose independent sin 0 NA
409 158.13 radiation 10 90 > th dose independent rect. 16 23
415 158.22 radiation 20 30 < th dose dependent rect. 13 23
422 158.31 radiation 30 270 < th dose dependent rect. 21 18
453 158.62 radiation 10 90 > th dose independent rect. 6 10
473 158.68 radiation 10 10 < th dose independent rect. 12 2
474 158.71 radiation 10 90 > th dose independent no NA NA
593 158.94 radiation 20 90 < th dose independent rect. 9 18
667 159.58 radiation 20 90 < th dose independent rect. 11 23
671 159.60 humidity 80 90 > th dose dependent rect. 13 2
735 159.96 radiation 20 1440 < th dose independent rect. 11 1
742 160.01 radiation 20 90 < th dose independent rect. 15 23
832 160.45 radiation 20 30 < th dose independent rect. 13 23
869 160.76 radiation 10 720 > th dose independent rect. 6 7
887 160.80 radiation 1 90 > th dose dependent no NA NA
889 160.80 radiation 1 90 > th dose dependent rect. 5 14