Os04g0603100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0603100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.54 | 0.563 | 5.32 | 1.17 | 2.34 | 0.776 | -0.326 | 1.32 | 0.246 | 3.12 | 80.35 | 709 | -- | -- |
| 147.51 | 0.566 | 5.31 | 1.27 | 2.34 | 0.81 | -0.333 | -- | 0.263 | 3.08 | 80.49 | 709 | -- | -- |
| 143.89 | 0.559 | 5.32 | 1.17 | 2.34 | 0.764 | -- | 1.32 | 0.247 | 3.14 | 80.32 | 709 | -- | -- |
| 147.87 | 0.566 | 5.31 | 1.27 | 2.35 | 0.788 | -- | -- | 0.265 | 3.11 | 80.75 | 709 | -- | -- |
| 239.9 | 0.721 | 5.31 | 1.32 | -- | 1.76 | -- | 0.19 | 0.318 | -- | 79.73 | 229 | -- | -- |
| 161.32 | 0.595 | 5.3 | 1.24 | 2.53 | -- | -0.00101 | -- | 0.241 | 3.82 | -- | -- | -- | -- |
| 161.32 | 0.595 | 5.3 | 1.24 | 2.53 | -- | -- | -- | 0.241 | 3.82 | -- | -- | -- | -- |
| 240.06 | 0.722 | 5.31 | 1.33 | -- | 1.76 | -- | -- | 0.318 | -- | 79.74 | 231 | -- | -- |
| 184.79 | 0.633 | 5.35 | -- | 2.05 | 0.764 | -- | -- | 0.152 | 3.18 | 83.97 | 433 | -- | -- |
| 513.29 | 1.06 | 5.31 | 1.35 | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
| 202.06 | 0.665 | 5.33 | -- | 2.55 | -- | -- | -- | 0.103 | 3.82 | -- | -- | -- | -- |
| 283.61 | 0.784 | 5.34 | -- | -- | 1.8 | -- | -- | 0.179 | -- | 81.21 | 253 | -- | -- |
| 561.21 | 1.11 | 5.34 | -- | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.35 | humidity | 80.0 | 720 | < th | dose independent | rect. | 9 | 6 |
| 2 | 138.38 | humidity | 80.0 | 720 | < th | dose independent | sin | 1 | NA |
| 3 | 138.51 | humidity | 80.0 | 720 | < th | dose independent | rect. | 7 | 9 |
| 5 | 138.60 | humidity | 80.0 | 720 | < th | dose independent | rect. | 5 | 11 |
| 18 | 139.54 | humidity | 80.0 | 720 | > th | dose independent | rect. | 23 | 20 |
| 21 | 139.72 | humidity | 80.0 | 720 | > th | dose independent | sin | 2 | NA |
| 23 | 139.74 | humidity | 80.0 | 720 | < th | dose independent | rect. | 5 | 14 |
| 56 | 140.56 | humidity | 80.0 | 720 | > th | dose independent | rect. | 23 | 17 |
| 65 | 140.72 | humidity | 80.0 | 720 | < th | dose independent | rect. | 11 | 2 |
| 80 | 140.91 | humidity | 80.0 | 720 | > th | dose independent | rect. | 7 | 8 |
| 83 | 141.00 | humidity | 80.0 | 720 | > th | dose independent | rect. | 8 | 6 |
| 85 | 141.01 | humidity | 80.0 | 270 | > th | dose independent | rect. | 5 | 14 |
| 96 | 141.24 | humidity | 80.0 | 720 | > th | dose independent | rect. | 2 | 13 |
| 124 | 141.61 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 8 | 6 |
| 140 | 141.74 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 14 | 7 |
| 176 | 142.11 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 180 | 142.11 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 188 | 142.19 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 194 | 142.23 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 205 | 142.30 | humidity | 70.0 | 720 | > th | dose dependent | sin | 2 | NA |
| 232 | 142.54 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 260 | 142.67 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 6 |
| 266 | 142.74 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 11 |
| 268 | 142.75 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 8 |
| 286 | 142.84 | humidity | 80.0 | 720 | > th | dose independent | rect. | 17 | 22 |
| 308 | 142.97 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 7 |
| 315 | 143.00 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 17 | NA |
| 333 | 143.06 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 8 |
| 334 | 143.06 | humidity | 80.0 | 720 | > th | dose independent | rect. | 7 | 22 |
| 335 | 143.06 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 8 |
| 396 | 143.22 | humidity | 80.0 | 720 | < th | dose independent | rect. | 17 | 23 |
| 409 | 143.24 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 411 | 143.24 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 7 | 13 |
| 418 | 143.26 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 2 | 17 |
| 455 | 143.34 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 21 |
| 480 | 143.43 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 7 |
| 481 | 143.43 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 7 |
| 514 | 143.50 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 5 | 14 |
| 515 | 143.51 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 7 |
| 561 | 143.63 | humidity | 80.0 | 720 | > th | dose independent | no | NA | NA |
| 562 | 143.63 | temperature | 25.0 | 270 | < th | dose independent | rect. | 15 | 6 |
| 564 | 143.63 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 567 | 143.64 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 23 |
| 568 | 143.65 | humidity | 80.0 | 720 | < th | dose independent | no | NA | NA |
| 612 | 143.72 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 19 | NA |
| 615 | 143.72 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 19 | NA |
| 632 | 143.75 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 19 | NA |
| 683 | 143.85 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 11 |
| 686 | 143.85 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 696 | 143.88 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 11 |
| 698 | 143.88 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 11 |
| 707 | 143.89 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 763 | 144.00 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 14 | 10 |
| 795 | 144.04 | humidity | 80.0 | 720 | > th | dose independent | rect. | 2 | 23 |
| 807 | 144.06 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 810 | 144.06 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 22 |
| 819 | 144.07 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 22 |
| 850 | 144.10 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 921 | 144.19 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 923 | 144.19 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 8 | 12 |