Os04g0602800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia lipolytica.
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Os04g0602800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia lipolytica.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.67 | 0.174 | 12.6 | 0.0752 | 0.0778 | -0.565 | 0.127 | -0.151 | 0.117 | 19.6 | 23.02 | 57 | -- | -- |
| 13.68 | 0.172 | 12.6 | 0.0975 | 0.0777 | -0.575 | 0.126 | -- | 0.123 | 19.7 | 23.02 | 57 | -- | -- |
| 13.71 | 0.172 | 12.6 | 0.0721 | 0.0771 | -0.562 | -- | -0.148 | 0.117 | 19.6 | 23 | 57 | -- | -- |
| 13.73 | 0.173 | 12.6 | 0.0954 | 0.0778 | -0.575 | -- | -- | 0.124 | 19.5 | 23 | 57 | -- | -- |
| 13.96 | 0.175 | 12.6 | 0.0518 | -- | -0.545 | -- | -0.238 | 0.112 | -- | 22.78 | 45 | -- | -- |
| 19.03 | 0.204 | 12.6 | -0.0123 | 0.21 | -- | 0.192 | -- | 0.0399 | 1.91 | -- | -- | -- | -- |
| 19.17 | 0.205 | 12.6 | -0.0182 | 0.21 | -- | -- | -- | 0.0388 | 1.93 | -- | -- | -- | -- |
| 13.99 | 0.174 | 12.6 | 0.0925 | -- | -0.562 | -- | -- | 0.123 | -- | 22.68 | 40 | -- | -- |
| 13.95 | 0.174 | 12.6 | -- | 0.074 | -0.547 | -- | -- | 0.109 | 20.1 | 23.1 | 57 | -- | -- |
| 21.83 | 0.218 | 12.6 | -0.00958 | -- | -- | -- | -- | 0.0436 | -- | -- | -- | -- | -- |
| 19.18 | 0.205 | 12.6 | -- | 0.21 | -- | -- | -- | 0.0408 | 1.93 | -- | -- | -- | -- |
| 14.19 | 0.176 | 12.6 | -- | -- | -0.545 | -- | -- | 0.11 | -- | 22.98 | 41 | -- | -- |
| 21.83 | 0.218 | 12.6 | -- | -- | -- | -- | -- | 0.0447 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.61 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 2 | 12.90 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 20 |
| 5 | 13.01 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 10 |
| 10 | 13.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 11 | 13.09 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 68 | 13.52 | temperature | 25 | 30 | > th | dose dependent | sin | 23 | NA |
| 72 | 13.53 | temperature | 10 | 30 | > th | dose dependent | sin | 22 | NA |
| 209 | 13.80 | temperature | 25 | 270 | > th | dose dependent | sin | 4 | NA |
| 355 | 14.05 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 362 | 14.05 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 371 | 14.06 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 463 | 14.12 | temperature | 25 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 500 | 14.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 520 | 14.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 19 |
| 542 | 14.21 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 556 | 14.23 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 567 | 14.24 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 14 |
| 607 | 14.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 792 | 14.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 828 | 14.42 | temperature | 25 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 848 | 14.45 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 869 | 14.47 | temperature | 30 | 90 | > th | dose independent | rect. | 9 | 8 |