Os04g0602400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Maltose excess protein 1, chloroplast precursor (Root cap protein 1).
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Os04g0602400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Maltose excess protein 1, chloroplast precursor (Root cap protein 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.4 | 0.371 | 11.3 | -0.146 | 0.883 | -0.907 | 0.0581 | 2.54 | -0.398 | 4.19 | 9.089 | 748 | -- | -- |
| 66.82 | 0.381 | 11.3 | -0.231 | 0.585 | -0.602 | 1.57 | -- | -0.394 | 4.53 | 19.48 | 904 | -- | -- |
| 62.4 | 0.368 | 11.3 | -0.139 | 0.871 | -0.913 | -- | 2.63 | -0.394 | 4.22 | 8.95 | 761 | -- | -- |
| 72.76 | 0.397 | 11.3 | -0.219 | 0.54 | -0.584 | -- | -- | -0.398 | 4.02 | 19.75 | 933 | -- | -- |
| 77.95 | 0.411 | 11.3 | -0.379 | -- | -0.572 | -- | 2.45 | -0.462 | -- | 30 | 1130 | -- | -- |
| 78.45 | 0.415 | 11.3 | -0.168 | 0.42 | -- | 0.86 | -- | -0.345 | 2.12 | -- | -- | -- | -- |
| 80.51 | 0.42 | 11.3 | -0.191 | 0.428 | -- | -- | -- | -0.349 | 1.07 | -- | -- | -- | -- |
| 80.37 | 0.418 | 11.3 | -0.281 | -- | -0.506 | -- | -- | -0.43 | -- | 29.27 | 1230 | -- | -- |
| 74.07 | 0.401 | 11.3 | -- | 0.534 | -0.578 | -- | -- | -0.397 | 3.93 | 19.78 | 931 | -- | -- |
| 91.86 | 0.448 | 11.3 | -0.175 | -- | -- | -- | -- | -0.34 | -- | -- | -- | -- | -- |
| 81.48 | 0.422 | 11.3 | -- | 0.424 | -- | -- | -- | -0.327 | 1.06 | -- | -- | -- | -- |
| 81.64 | 0.421 | 11.3 | -- | -- | -0.562 | -- | -- | -0.409 | -- | 29.3 | 1232 | -- | -- |
| 92.67 | 0.449 | 11.3 | -- | -- | -- | -- | -- | -0.321 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.11 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 3 | 59.13 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 7 | 59.19 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 8 | 59.21 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 16 | 59.31 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 17 | 59.31 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 18 | 59.32 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 22 | 13 |
| 23 | 59.35 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 24 | 59.35 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 26 | 59.39 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 28 | 59.43 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 30 | 59.43 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 6 |
| 39 | 59.50 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 47 | 59.53 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 65 | 59.68 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 73 | 59.76 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 75 | 59.77 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 86 | 59.86 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 96 | 59.90 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 119 | 60.03 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 120 | 60.03 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 162 | 60.35 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 231 | 60.83 | temperature | 20.0 | 720 | > th | dose independent | sin | 8 | NA |
| 239 | 60.88 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 270 | 61.06 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 295 | 61.26 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 11 | 19 |
| 326 | 61.42 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 384 | 61.82 | temperature | 20.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 389 | 61.85 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 409 | 61.90 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 412 | 61.91 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 424 | 61.98 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 432 | 62.02 | radiation | 10.0 | 720 | < th | dose independent | rect. | 1 | 23 |
| 456 | 62.13 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 474 | 62.13 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 499 | 62.17 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 520 | 62.29 | radiation | 10.0 | 720 | < th | dose independent | rect. | 9 | 23 |
| 564 | 62.34 | radiation | 10.0 | 720 | < th | dose independent | rect. | 11 | 23 |
| 570 | 62.38 | radiation | 10.0 | 720 | < th | dose independent | rect. | 11 | 21 |
| 622 | 62.55 | radiation | 10.0 | 720 | < th | dose independent | rect. | 13 | 19 |
| 625 | 62.56 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 642 | 62.60 | radiation | 10.0 | 720 | < th | dose independent | rect. | 3 | 14 |
| 645 | 62.62 | temperature | 20.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 646 | 62.62 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 20 |
| 650 | 62.63 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 651 | 62.63 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 16 |
| 653 | 62.64 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 662 | 62.66 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 671 | 62.69 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 673 | 62.70 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 694 | 62.76 | radiation | 10.0 | 720 | < th | dose independent | rect. | 7 | 23 |
| 709 | 62.79 | radiation | 10.0 | 720 | < th | dose independent | rect. | 2 | 16 |
| 734 | 62.88 | radiation | 10.0 | 720 | < th | dose independent | no | NA | NA |
| 735 | 62.88 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 781 | 63.00 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 787 | 63.03 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 791 | 63.03 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 796 | 63.04 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 838 | 63.11 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 3 | NA |
| 841 | 63.12 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 862 | 63.16 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 863 | 63.16 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 866 | 63.16 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 867 | 63.16 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 868 | 63.17 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 20 |
| 882 | 63.19 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 883 | 63.20 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 886 | 63.20 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 889 | 63.21 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 890 | 63.21 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 910 | 63.25 | radiation | 10.0 | 720 | < th | dose independent | rect. | 19 | 23 |
| 928 | 63.27 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 15 |
| 961 | 63.32 | radiation | 10.0 | 720 | < th | dose independent | rect. | 22 | 23 |
| 965 | 63.33 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 18 | 14 |