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Os04g0602000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0262) R2 : 0.896
β1 : 0.776 (0.0957) R2dD : 0.016 R2D : 0.0104
β2 : 2.59 (0.0848) R2dC : 0.334 R2C : 0.653
β3 : 2.43 (0.101) R2dE : 0.21 R2E : 0.534
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.269 (0.0564) R2dN8 : 0.00768 R2N8 : 0.0202
σ : 0.488
deviance : 109.97
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_____
C
peak time of C : 16.7
E
wheather : precipitation
threshold : 0.7669
memory length : 217
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.58
open length of G : 20.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
106.47 0.485 12.5 0.793 2.56 2.32 -1.3 0.0391 -0.305 16.7 0.8041 233 6.33 21
106.35 0.48 12.5 0.788 2.57 2.33 -1.29 -- -0.295 16.7 1.027 228 6.37 21
110.4 0.489 12.5 0.777 2.54 2.36 -- -0.191 -0.272 16.7 1.077 229 6.35 21
109.97 0.488 12.5 0.776 2.59 2.43 -- -- -0.269 16.7 0.7669 217 6.58 20.8
220.83 0.692 12.4 1.31 -- 3.87 -- -1.03 -0.0195 -- 3.032 304 6.73 17.9
224.09 0.702 12.6 0.693 3.9 -- -1.45 -- -0.477 17.2 -- -- -- --
229.35 0.709 12.6 0.693 3.89 -- -- -- -0.484 17.2 -- -- -- --
214.59 0.682 12.4 1.02 -- 3.76 -- -- -0.193 -- 0.4972 316 6.67 17.7
125.77 0.522 12.5 -- 2.54 2.46 -- -- -0.329 16.6 2.974 216 6.62 20.8
1020.84 1.49 12.5 0.557 -- -- -- -- -0.582 -- -- -- -- --
242.02 0.728 12.6 -- 3.88 -- -- -- -0.561 17.2 -- -- -- --
231.89 0.709 12.5 -- -- 3.68 -- -- -0.344 -- 1.261 321 6.73 17.5
1029.04 1.5 12.5 -- -- -- -- -- -0.644 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.64 wind 9.0 270 < th dose independent rect. 6 21
2 109.86 precipitation 0.1 270 < th dose independent rect. 6 21
3 109.86 precipitation 0.1 270 < th dose dependent rect. 6 21
4 111.52 wind 9.0 270 < th dose independent rect. 3 3
5 111.52 temperature 10.0 270 > th dose independent rect. 3 3
7 111.52 temperature 30.0 270 < th dose independent rect. 3 3
8 111.52 humidity 50.0 270 > th dose independent rect. 3 3
11 111.52 atmosphere 995.0 270 > th dose independent rect. 3 3
12 111.52 atmosphere 1015.0 270 < th dose independent rect. 3 3
13 111.52 radiation 20.0 270 < th dose independent rect. 3 3
16 111.52 temperature 10.0 270 > th dose independent rect. 6 21
17 111.54 radiation 40.0 270 < th dose dependent rect. 3 3
24 113.02 precipitation 0.1 270 < th dose independent rect. 3 3
25 113.02 precipitation 0.1 270 < th dose dependent rect. 3 3
27 114.19 wind 9.0 10 < th dose independent rect. 8 21
28 114.63 wind 9.0 90 < th dose independent rect. 8 20
29 114.96 humidity 50.0 270 > th dose dependent rect. 3 3
32 116.37 wind 7.0 10 < th dose independent rect. 5 3
34 116.37 temperature 10.0 10 > th dose independent rect. 5 3
36 116.37 temperature 30.0 10 < th dose independent rect. 5 3
37 116.37 humidity 50.0 10 > th dose independent rect. 5 3
39 116.37 atmosphere 995.0 10 > th dose independent rect. 5 3
40 116.37 atmosphere 1015.0 10 < th dose independent rect. 5 3
41 116.37 temperature 10.0 10 > th dose independent rect. 8 21
42 116.46 precipitation 0.1 90 < th dose independent rect. 8 20
43 116.46 precipitation 0.1 90 < th dose dependent rect. 8 20
52 116.55 temperature 10.0 90 > th dose independent rect. 8 20
55 116.64 wind 9.0 270 < th dose dependent rect. 3 3
56 116.72 precipitation 0.1 10 < th dose independent rect. 5 3
57 116.72 precipitation 0.1 10 < th dose dependent rect. 5 3
61 116.81 radiation 40.0 10 < th dose independent rect. 5 3
63 116.93 precipitation 0.1 10 < th dose independent rect. 8 21
64 116.93 precipitation 0.1 10 < th dose dependent rect. 8 21
65 116.94 temperature 10.0 10 > th dose dependent rect. 5 3
68 117.45 temperature 10.0 270 > th dose dependent rect. 3 3
99 119.77 atmosphere 1010.0 270 < th dose independent rect. 2 5
102 119.88 wind 9.0 270 < th dose independent rect. 2 5
103 119.88 temperature 10.0 270 > th dose independent rect. 2 5
105 119.88 temperature 30.0 270 < th dose independent rect. 2 5
106 119.88 humidity 50.0 270 > th dose independent rect. 2 5
108 119.88 atmosphere 995.0 270 > th dose independent rect. 2 5
110 119.88 radiation 30.0 270 < th dose independent rect. 2 5
118 120.34 wind 9.0 10 < th dose dependent rect. 5 3
128 121.08 precipitation 0.1 270 < th dose independent rect. 2 5
129 121.08 precipitation 0.1 270 < th dose dependent rect. 2 5
148 123.31 atmosphere 995.0 10 > th dose independent rect. 8 21
150 123.61 humidity 50.0 270 > th dose dependent rect. 2 5
172 124.42 atmosphere 995.0 10 > th dose dependent rect. 5 3
174 124.61 atmosphere 995.0 90 > th dose independent rect. 8 20
194 124.90 humidity 50.0 10 > th dose dependent rect. 5 3
206 125.52 radiation 40.0 10 < th dose dependent rect. 5 3
238 126.16 atmosphere 995.0 90 > th dose dependent rect. 4 4
266 126.63 radiation 1.0 270 < th dose independent rect. 3 10
281 127.08 wind 9.0 90 < th dose dependent rect. 8 20
287 127.35 wind 9.0 270 < th dose dependent rect. 2 5
331 128.01 radiation 1.0 270 < th dose dependent rect. 3 10
344 128.22 wind 1.0 270 > th dose independent rect. 3 3
372 128.57 temperature 10.0 270 > th dose dependent rect. 2 5
383 128.73 wind 1.0 90 > th dose independent rect. 8 20
433 129.80 atmosphere 995.0 270 > th dose independent rect. 6 21
441 130.15 radiation 1.0 10 > th dose independent rect. 5 3
470 130.48 wind 9.0 1440 < th dose independent rect. 5 4
471 130.48 temperature 10.0 1440 > th dose independent rect. 5 4
474 130.48 humidity 50.0 1440 > th dose independent rect. 5 4
476 130.48 atmosphere 995.0 1440 > th dose independent rect. 5 4
477 130.48 atmosphere 1015.0 1440 < th dose independent rect. 5 4
478 130.48 temperature 10.0 1440 > th dose independent rect. 9 20
505 131.20 humidity 50.0 10 > th dose independent rect. 8 21
599 133.28 temperature 15.0 90 > th dose independent rect. 15 17
607 133.70 wind 1.0 270 > th dose independent rect. 2 5
671 134.73 wind 1.0 10 > th dose independent rect. 5 3
672 134.74 radiation 40.0 90 < th dose independent rect. 13 19
701 135.10 temperature 10.0 10 > th dose dependent rect. 8 21
712 135.44 wind 9.0 10 < th dose dependent rect. 8 21
728 135.99 wind 1.0 270 > th dose independent rect. 6 21
735 136.20 wind 7.0 270 < th dose independent rect. 21 14
736 136.24 temperature 15.0 270 > th dose independent rect. 11 10
750 136.61 atmosphere 1015.0 10 < th dose independent rect. 8 21
770 137.31 wind 9.0 90 < th dose independent rect. 8 7
771 137.33 atmosphere 1015.0 90 < th dose independent rect. 8 20
798 137.86 precipitation 0.1 90 < th dose independent rect. 8 7
799 137.86 precipitation 0.1 90 < th dose dependent rect. 8 7
804 137.91 temperature 15.0 10 > th dose independent rect. 15 17
808 138.01 temperature 10.0 90 > th dose dependent rect. 8 20
818 138.15 radiation 40.0 90 < th dose independent rect. 15 17
822 138.21 temperature 10.0 90 > th dose independent rect. 8 7
823 138.21 atmosphere 1015.0 90 < th dose independent rect. 8 7
839 138.29 radiation 1.0 90 > th dose independent rect. 8 7
847 138.47 atmosphere 1015.0 10 < th dose dependent rect. 5 3
855 138.62 atmosphere 1015.0 90 < th dose dependent rect. 5 2
877 138.78 atmosphere 1015.0 270 < th dose dependent rect. 3 3
878 138.80 precipitation 0.1 270 < th dose independent rect. 21 14
879 138.80 precipitation 0.1 270 < th dose dependent rect. 21 14
883 138.86 atmosphere 995.0 90 > th dose independent rect. 15 17
888 138.93 temperature 15.0 270 > th dose independent rect. 11 20
891 139.00 atmosphere 995.0 90 > th dose independent rect. 8 7
895 139.06 atmosphere 1015.0 270 < th dose independent rect. 11 10
898 139.13 wind 9.0 270 < th dose dependent rect. 6 21
922 139.42 temperature 10.0 270 > th dose dependent rect. 8 2
931 139.57 wind 9.0 90 < th dose independent rect. 15 17
932 139.57 temperature 30.0 270 < th dose dependent rect. 3 3
958 140.03 temperature 10.0 270 > th dose independent rect. 21 14
959 140.03 atmosphere 995.0 270 > th dose independent rect. 21 14
972 140.31 humidity 50.0 270 > th dose independent rect. 21 14