Os04g0601500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0601500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.39 | 0.302 | 8.51 | -0.779 | 0.503 | -0.603 | 0.48 | -0.0369 | -0.0728 | 2.3 | 55.96 | 5771 | -- | -- |
| 41.38 | 0.3 | 8.51 | -0.781 | 0.503 | -0.616 | 0.487 | -- | -0.074 | 2.31 | 55.98 | 5803 | -- | -- |
| 42.23 | 0.303 | 8.51 | -0.789 | 0.499 | -0.598 | -- | -0.0663 | -0.0728 | 2.32 | 56 | 5801 | -- | -- |
| 42.23 | 0.303 | 8.51 | -0.793 | 0.502 | -0.6 | -- | -- | -0.072 | 2.31 | 55.51 | 5801 | -- | -- |
| 56.56 | 0.35 | 8.5 | -0.78 | -- | -0.576 | -- | -0.023 | -0.0494 | -- | 60.2 | 4754 | -- | -- |
| 47.47 | 0.323 | 8.48 | -0.8 | 0.49 | -- | 0.416 | -- | 0.0431 | 2.32 | -- | -- | -- | -- |
| 48.11 | 0.325 | 8.48 | -0.811 | 0.491 | -- | -- | -- | 0.0406 | 2.31 | -- | -- | -- | -- |
| 56.56 | 0.35 | 8.5 | -0.782 | -- | -0.582 | -- | -- | -0.0522 | -- | 60.39 | 4756 | -- | -- |
| 53.48 | 0.341 | 8.48 | -- | 0.489 | -0.772 | -- | -- | 0.0469 | 2.36 | 51 | 6341 | -- | -- |
| 62.39 | 0.369 | 8.48 | -0.791 | -- | -- | -- | -- | 0.0526 | -- | -- | -- | -- | -- |
| 65.45 | 0.378 | 8.46 | -- | 0.475 | -- | -- | -- | 0.131 | 2.28 | -- | -- | -- | -- |
| 67.59 | 0.383 | 8.46 | -- | -- | -0.765 | -- | -- | 0.112 | -- | 50 | 7297 | -- | -- |
| 78.87 | 0.415 | 8.46 | -- | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.71 | humidity | 60 | 4320 | < th | dose dependent | rect. | 11 | 5 |
| 3 | 41.77 | humidity | 60 | 4320 | < th | dose dependent | rect. | 18 | 22 |
| 19 | 41.82 | humidity | 90 | 30 | < th | dose dependent | rect. | 19 | 22 |
| 25 | 41.89 | humidity | 80 | 4320 | < th | dose dependent | rect. | 10 | 2 |
| 43 | 41.92 | humidity | 50 | 1440 | > th | dose dependent | rect. | 10 | 2 |
| 44 | 41.95 | humidity | 60 | 4320 | < th | dose dependent | sin | 0 | NA |
| 49 | 41.98 | humidity | 60 | 4320 | < th | dose dependent | rect. | 14 | 23 |
| 50 | 41.99 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 53 | 41.99 | humidity | 60 | 4320 | < th | dose dependent | rect. | 14 | 2 |
| 72 | 42.02 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 87 | 42.03 | humidity | 60 | 4320 | < th | dose dependent | no | NA | NA |
| 219 | 42.08 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 229 | 42.13 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 246 | 42.14 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 275 | 42.22 | humidity | 80 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 280 | 42.24 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 21 |
| 289 | 42.27 | radiation | 20 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 297 | 42.30 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 20 |
| 298 | 42.31 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 339 | 42.35 | humidity | 60 | 4320 | < th | dose independent | rect. | 14 | 23 |
| 344 | 42.37 | humidity | 50 | 14400 | > th | dose independent | sin | 10 | NA |
| 348 | 42.38 | radiation | 20 | 90 | < th | dose dependent | sin | 0 | NA |
| 350 | 42.38 | humidity | 60 | 14400 | < th | dose dependent | rect. | 18 | 15 |
| 352 | 42.39 | humidity | 60 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 353 | 42.39 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 365 | 42.40 | humidity | 80 | 4320 | < th | dose dependent | rect. | 3 | 9 |
| 377 | 42.41 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 378 | 42.41 | humidity | 60 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 379 | 42.41 | humidity | 60 | 14400 | < th | dose dependent | sin | 10 | NA |
| 387 | 42.42 | humidity | 50 | 14400 | < th | dose independent | sin | 10 | NA |
| 388 | 42.42 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 423 | 42.44 | humidity | 60 | 4320 | < th | dose independent | rect. | 9 | 8 |
| 458 | 42.45 | humidity | 60 | 4320 | < th | dose independent | sin | 2 | NA |
| 578 | 42.47 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 19 |
| 650 | 42.49 | humidity | 60 | 4320 | < th | dose independent | no | NA | NA |
| 773 | 42.49 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 19 |
| 781 | 42.50 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 895 | 42.53 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 928 | 42.54 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 952 | 42.56 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 971 | 42.56 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 17 |
| 980 | 42.56 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 2 |