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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0601200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.31 (0.0347) R2 : 0.619
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.892 (0.0895) R2dC : 0.0834 R2C : 0.0894
β3 : 3.34 (0.157) R2dE : 0.404 R2E : 0.468
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.539 (0.0746) R2dN8 : 0.0599 R2N8 : 0.115
σ : 0.645
deviance : 192.08
__
_____
C
peak time of C : 19
E
wheather : temperature
threshold : 18.07
memory length : 2559
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
195.35 0.657 4.26 0.135 0.938 2.54 0.116 -1.56 -0.499 19 18.7 2503 -- --
196.76 0.653 4.3 0.0366 0.889 3.08 0.245 -- -0.532 19.1 18.54 2562 -- --
190.63 0.643 4.25 0.146 0.922 2.82 -- -1.71 -0.48 19 18.12 2561 -- --
192.07 0.645 4.31 -0.0825 0.901 3.29 -- -- -0.539 19.1 18.1 2554 -- --
231.55 0.709 4.25 0.121 -- 3.05 -- -1.41 -0.5 -- 18.2 2650 -- --
328.7 0.85 4.43 -1.41 0.988 -- -0.105 -- -1.08 18.3 -- -- -- --
328.72 0.849 4.43 -1.41 0.988 -- -- -- -1.08 18.3 -- -- -- --
232.1 0.71 4.28 -0.0183 -- 3.45 -- -- -0.543 -- 18.02 2651 -- --
192.08 0.645 4.31 -- 0.892 3.34 -- -- -0.539 19 18.07 2559 -- --
379.36 0.91 4.41 -1.43 -- -- -- -- -1.1 -- -- -- -- --
380.8 0.913 4.39 -- 1.01 -- -- -- -0.922 18.3 -- -- -- --
232.11 0.71 4.28 -- -- 3.46 -- -- -0.539 -- 18.02 2651 -- --
433.44 0.972 4.37 -- -- -- -- -- -0.941 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 199.98 wind 9 43200 < th dose independent rect. 15 17
2 200.02 humidity 90 43200 < th dose dependent rect. 19 5
3 200.05 temperature 20 4320 < th dose dependent rect. 22 2
4 200.13 humidity 50 43200 > th dose dependent rect. 19 4
5 200.14 humidity 50 43200 > th dose dependent rect. 18 6
6 200.18 wind 9 43200 > th dose independent rect. 15 17
7 200.18 humidity 90 43200 < th dose dependent rect. 18 7
9 200.38 wind 7 43200 > th dose dependent rect. 15 17
11 200.41 wind 9 43200 < th dose independent rect. 14 19
24 200.80 wind 9 43200 > th dose independent rect. 13 20
26 200.84 humidity 80 43200 < th dose dependent rect. 20 1
31 200.97 humidity 50 43200 > th dose dependent rect. 20 2
36 201.09 wind 9 43200 > th dose dependent rect. 13 19
38 201.16 temperature 20 4320 < th dose dependent rect. 20 8
44 201.33 wind 9 43200 > th dose dependent rect. 11 21
63 201.59 wind 9 43200 < th dose independent sin 13 NA
66 201.62 wind 9 43200 > th dose independent rect. 11 23
75 201.85 wind 7 43200 > th dose dependent sin 13 NA
76 201.87 wind 9 43200 < th dose independent rect. 8 21
79 201.90 wind 9 43200 > th dose independent sin 13 NA
84 201.94 wind 9 43200 > th dose independent rect. 9 23
87 201.96 wind 9 43200 < th dose independent rect. 9 23
91 201.99 wind 9 43200 > th dose independent rect. 8 21
98 202.03 wind 9 43200 > th dose dependent sin 17 NA
117 202.23 wind 9 43200 < th dose independent rect. 3 20
131 202.35 wind 9 43200 < th dose independent rect. 20 23
132 202.36 wind 9 43200 > th dose independent rect. 3 20
135 202.38 wind 9 43200 > th dose independent rect. 8 16
141 202.40 wind 9 43200 < th dose independent rect. 7 17
191 202.64 wind 9 43200 < th dose independent no NA NA
227 202.78 wind 9 43200 > th dose independent rect. 20 23
245 202.87 humidity 80 43200 < th dose independent rect. 20 6
280 203.03 temperature 20 4320 < th dose dependent sin 12 NA
292 203.09 wind 9 43200 > th dose independent no NA NA
310 203.15 wind 7 43200 > th dose independent rect. 17 12
317 203.19 wind 7 43200 > th dose dependent rect. 8 21
320 203.22 wind 9 43200 > th dose independent rect. 22 23
323 203.23 wind 7 43200 < th dose independent rect. 17 12
331 203.25 humidity 90 43200 < th dose dependent rect. 18 15
338 203.29 wind 7 43200 > th dose dependent rect. 3 21
352 203.37 wind 7 43200 > th dose dependent rect. 7 17
364 203.42 humidity 90 43200 < th dose dependent sin 13 NA
399 203.54 humidity 80 43200 < th dose independent rect. 19 13
425 203.65 humidity 80 43200 < th dose independent sin 10 NA
427 203.65 humidity 60 43200 < th dose independent rect. 20 14
446 203.69 wind 7 43200 > th dose dependent rect. 20 23
447 203.70 temperature 20 4320 > th dose independent rect. 18 4
450 203.71 wind 7 43200 > th dose dependent no NA NA
456 203.74 wind 9 43200 < th dose independent rect. 17 23
494 203.88 humidity 80 43200 > th dose independent rect. 20 6
511 203.96 temperature 20 4320 < th dose dependent rect. 1 1
528 204.03 wind 9 43200 < th dose independent rect. 15 23
587 204.24 humidity 60 43200 > th dose independent rect. 20 13
588 204.24 humidity 70 43200 > th dose independent rect. 21 17
648 204.44 humidity 80 43200 > th dose independent rect. 19 13
662 204.48 wind 9 43200 > th dose independent rect. 16 23
668 204.50 humidity 50 43200 > th dose dependent sin 14 NA
700 204.60 humidity 80 43200 > th dose independent sin 10 NA
719 204.66 wind 7 43200 < th dose independent rect. 18 8
724 204.67 humidity 50 43200 > th dose dependent rect. 17 17
732 204.69 wind 7 43200 > th dose dependent rect. 17 23
753 204.75 wind 7 43200 > th dose independent rect. 18 7
768 204.78 wind 9 43200 > th dose independent sin 23 NA
774 204.80 temperature 20 4320 < th dose dependent rect. 3 1
782 204.84 temperature 20 14400 > th dose independent rect. 20 1
801 204.89 wind 9 43200 < th dose independent sin 0 NA
863 205.04 humidity 70 43200 < th dose independent rect. 19 19
888 205.12 temperature 20 14400 < th dose independent rect. 21 1
904 205.16 humidity 70 43200 < th dose dependent rect. 20 13
931 205.23 wind 9 43200 > th dose dependent rect. 10 13
940 205.26 humidity 80 43200 < th dose independent rect. 21 3
967 205.34 wind 7 43200 > th dose dependent sin 23 NA