Os04g0600800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0600800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9.88 | 0.148 | 11 | -0.101 | 0.0178 | -0.41 | 0.609 | 0.0559 | 0.187 | 19.6 | 24.6 | 10 | -- | -- |
| 9.85 | 0.147 | 11 | -0.109 | 0.0154 | -0.412 | 0.609 | -- | 0.184 | 19.6 | 24.6 | 8 | -- | -- |
| 10.76 | 0.154 | 11 | -0.145 | 0.0591 | -0.336 | -- | -0.0747 | 0.175 | 1.29 | 24.6 | 10 | -- | -- |
| 10.76 | 0.154 | 11 | -0.136 | 0.0578 | -0.343 | -- | -- | 0.177 | 1.28 | 24.61 | 3 | -- | -- |
| 10.9 | 0.155 | 11 | -0.125 | -- | -0.396 | -- | 0.0113 | 0.184 | -- | 24.6 | 7 | -- | -- |
| 12.44 | 0.165 | 11 | -0.181 | 0.184 | -- | 0.175 | -- | 0.146 | 1.82 | -- | -- | -- | -- |
| 12.52 | 0.166 | 11 | -0.187 | 0.188 | -- | -- | -- | 0.145 | 2.37 | -- | -- | -- | -- |
| 10.89 | 0.154 | 11 | -0.118 | -- | -0.392 | -- | -- | 0.198 | -- | 23.5 | 4 | -- | -- |
| 11.22 | 0.156 | 11 | -- | 0.043 | -0.369 | -- | -- | 0.198 | 0.644 | 24.53 | 3 | -- | -- |
| 14.61 | 0.179 | 11 | -0.179 | -- | -- | -- | -- | 0.149 | -- | -- | -- | -- | -- |
| 13.44 | 0.172 | 11 | -- | 0.185 | -- | -- | -- | 0.166 | 2.35 | -- | -- | -- | -- |
| 11.23 | 0.157 | 11 | -- | -- | -0.412 | -- | -- | 0.216 | -- | 23.2 | 3 | -- | -- |
| 15.46 | 0.184 | 11 | -- | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 8.34 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 6 | 8.61 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 31 | 8.82 | temperature | 20 | 10 | > th | dose dependent | sin | 3 | NA |
| 75 | 8.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 109 | 9.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 13 |
| 115 | 9.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 11 |
| 131 | 9.11 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 180 | 9.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 236 | 9.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 10 |
| 283 | 9.33 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 303 | 9.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 13 |
| 308 | 9.37 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 8 |
| 331 | 9.39 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 442 | 9.50 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 13 |
| 475 | 9.53 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 2 |
| 486 | 9.54 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 5 |
| 518 | 9.57 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 528 | 9.58 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 560 | 9.60 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 648 | 9.65 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 14 |
| 662 | 9.66 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 704 | 9.69 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 787 | 9.73 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 19 |
| 906 | 9.79 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 21 |
| 934 | 9.80 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 20 |
| 955 | 9.81 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 956 | 9.81 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 996 | 9.82 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 997 | 9.82 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 8 |