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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0600400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase aspartic, catalytic domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.07 (0.0329) R2 : 0.13
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.538 (0.0844) R2dC : 0.078 R2C : 0.0597
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.369 (0.0692) R2dN8 : 0.0702 R2N8 : 0.0519
σ : 0.62
deviance : 175.86
__
_____
C
peak time of C : 7.81
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
163.18 0.6 6.14 -0.755 0.853 1.03 -0.791 -3.77 -0.537 6.64 25.7 328 -- --
166.32 0.601 6.08 -0.332 0.861 0.766 -0.322 -- -0.422 7.04 26.2 413 -- --
164.31 0.597 6.13 -0.758 0.861 1.06 -- -3.59 -0.509 6.9 26.15 407 -- --
166.29 0.601 6.08 -0.325 0.804 0.692 -- -- -0.416 7.05 26.27 402 -- --
184.81 0.633 6.16 -0.946 -- 0.726 -- -3.15 -0.443 -- 28.23 1550 -- --
173.91 0.618 6.08 -0.206 0.541 -- -0.517 -- -0.395 7.6 -- -- -- --
174.62 0.619 6.08 -0.217 0.539 -- -- -- -0.394 7.78 -- -- -- --
184.8 0.633 6.08 -0.311 -- 0.392 -- -- -0.344 -- 28.8 1578 -- --
168.97 0.605 6.07 -- 0.781 0.629 -- -- -0.374 7.05 26.3 388 -- --
190.36 0.645 6.09 -0.211 -- -- -- -- -0.386 -- -- -- -- --
175.86 0.62 6.07 -- 0.538 -- -- -- -0.369 7.81 -- -- -- --
187.24 0.637 6.08 -- -- 0.338 -- -- -0.313 -- 29 1579 -- --
191.53 0.646 6.09 -- -- -- -- -- -0.363 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 157.99 temperature 25.0 270 < th dose independent rect. 1 6
3 158.71 temperature 30.0 90 < th dose independent rect. 10 17
4 158.79 wind 1.0 14400 > th dose independent rect. 3 2
5 158.85 wind 1.0 43200 < th dose independent rect. 1 10
7 158.97 wind 3.0 43200 < th dose dependent rect. 24 5
8 158.98 wind 3.0 43200 < th dose dependent rect. 2 6
13 159.12 temperature 30.0 270 < th dose dependent rect. 1 6
15 159.24 wind 1.0 43200 > th dose independent rect. 1 10
16 159.24 temperature 30.0 270 < th dose independent rect. 22 14
22 159.39 wind 1.0 43200 > th dose independent rect. 1 3
30 159.52 wind 1.0 14400 < th dose independent rect. 3 2
32 159.56 wind 1.0 43200 > th dose independent rect. 3 9
35 159.65 wind 1.0 43200 < th dose independent rect. 3 7
44 159.73 temperature 30.0 270 < th dose independent rect. 7 8
47 159.75 wind 3.0 14400 < th dose dependent rect. 2 2
53 159.84 wind 1.0 43200 < th dose independent rect. 24 5
74 160.16 wind 1.0 43200 < th dose independent rect. 1 3
86 160.31 temperature 30.0 90 < th dose dependent rect. 3 6
87 160.32 temperature 30.0 270 < th dose independent rect. 8 18
88 160.33 wind 1.0 43200 > th dose independent rect. 24 5
100 160.51 temperature 30.0 270 < th dose independent rect. 7 20
101 160.53 humidity 50.0 4320 > th dose independent rect. 4 7
114 160.78 temperature 25.0 270 < th dose independent rect. 3 3
116 160.78 atmosphere 995.0 90 > th dose independent rect. 10 17
119 160.80 temperature 30.0 10 < th dose independent rect. 10 17
125 160.92 temperature 30.0 90 < th dose independent rect. 10 6
133 161.02 wind 9.0 14400 > th dose dependent rect. 10 1
147 161.15 humidity 80.0 43200 < th dose independent rect. 5 2
163 161.28 temperature 30.0 270 < th dose independent rect. 9 3
172 161.38 humidity 80.0 43200 > th dose independent rect. 5 2
197 161.60 wind 3.0 43200 < th dose dependent sin 7 NA
198 161.60 precipitation 0.1 43200 > th dose dependent rect. 19 1
205 161.66 precipitation 0.1 43200 > th dose dependent rect. 13 1
211 161.68 wind 9.0 90 < th dose dependent rect. 3 7
214 161.69 temperature 30.0 270 < th dose independent rect. 6 23
215 161.69 temperature 10.0 270 > th dose dependent rect. 12 10
223 161.76 temperature 20.0 1440 < th dose independent rect. 21 1
224 161.76 radiation 40.0 1440 < th dose independent rect. 15 8
233 161.81 temperature 30.0 10 < th dose independent rect. 10 19
249 161.94 wind 7.0 90 < th dose independent rect. 3 7
250 161.94 wind 9.0 90 < th dose independent rect. 10 17
251 161.94 humidity 50.0 90 > th dose independent rect. 10 17
263 161.97 radiation 40.0 1440 < th dose independent rect. 15 5
269 162.00 wind 7.0 43200 < th dose dependent rect. 11 1
272 162.02 humidity 80.0 43200 < th dose independent rect. 2 6
273 162.02 radiation 30.0 90 < th dose independent rect. 10 17
286 162.07 wind 5.0 43200 < th dose dependent rect. 6 3
287 162.07 wind 1.0 43200 > th dose dependent rect. 5 8
290 162.09 precipitation 0.1 90 < th dose independent rect. 3 7
292 162.09 precipitation 0.1 90 < th dose dependent rect. 3 7
311 162.15 wind 3.0 43200 < th dose independent rect. 5 4
320 162.19 temperature 10.0 90 > th dose independent rect. 3 7
322 162.19 humidity 50.0 90 > th dose independent rect. 3 7
323 162.19 atmosphere 995.0 90 > th dose independent rect. 3 7
324 162.19 atmosphere 1015.0 90 < th dose independent rect. 3 7
325 162.19 temperature 10.0 90 > th dose independent rect. 10 17
332 162.22 atmosphere 1015.0 90 < th dose dependent rect. 3 7
333 162.23 precipitation 0.1 14400 > th dose independent rect. 12 2
356 162.28 wind 9.0 43200 < th dose dependent rect. 6 3
394 162.36 wind 1.0 43200 > th dose dependent rect. 5 4
405 162.39 wind 1.0 43200 > th dose dependent rect. 11 2
430 162.43 radiation 40.0 90 < th dose independent rect. 3 7
442 162.46 temperature 20.0 1440 > th dose independent rect. 21 1
450 162.48 precipitation 0.1 14400 < th dose independent rect. 13 1
451 162.48 precipitation 0.1 14400 < th dose dependent rect. 13 1
458 162.50 wind 3.0 43200 > th dose independent rect. 5 4
477 162.51 wind 5.0 43200 < th dose dependent rect. 20 17
480 162.52 precipitation 0.1 90 < th dose independent rect. 10 17
486 162.52 precipitation 0.1 90 < th dose dependent rect. 10 17
493 162.54 temperature 30.0 10 < th dose independent rect. 10 6
558 162.65 wind 9.0 90 < th dose dependent rect. 10 17
566 162.67 temperature 10.0 1440 > th dose independent rect. 4 7
570 162.67 atmosphere 995.0 1440 > th dose independent rect. 4 7
571 162.67 temperature 10.0 1440 > th dose independent rect. 11 17
594 162.71 wind 3.0 43200 > th dose independent rect. 7 6
603 162.72 precipitation 0.1 4320 > th dose dependent rect. 19 10
611 162.74 wind 1.0 4320 > th dose independent rect. 17 3
618 162.75 wind 1.0 270 > th dose independent rect. 12 10
639 162.78 temperature 25.0 720 > th dose dependent rect. 6 8
666 162.81 wind 1.0 43200 > th dose dependent rect. 24 14
698 162.87 wind 1.0 43200 > th dose dependent sin 5 NA
750 162.94 humidity 70.0 43200 > th dose independent rect. 13 1
751 162.94 temperature 30.0 10 < th dose independent rect. 10 4
780 162.97 wind 9.0 270 < th dose independent rect. 22 14
817 163.03 wind 3.0 43200 < th dose independent sin 5 NA
820 163.03 precipitation 0.1 270 < th dose independent rect. 12 10
826 163.03 precipitation 0.1 270 < th dose dependent rect. 12 10
841 163.05 atmosphere 995.0 10 > th dose independent rect. 10 19
857 163.06 wind 1.0 43200 > th dose dependent rect. 19 18
870 163.08 radiation 40.0 10 < th dose independent rect. 3 8
889 163.10 wind 3.0 43200 < th dose independent rect. 18 15
893 163.10 temperature 25.0 270 > th dose dependent rect. 7 14
905 163.11 precipitation 0.1 14400 > th dose dependent rect. 9 5
907 163.12 precipitation 0.1 14400 < th dose independent rect. 19 1
909 163.12 humidity 80.0 43200 > th dose independent rect. 23 3
911 163.12 radiation 30.0 4320 > th dose independent rect. 7 4
930 163.12 precipitation 0.1 14400 < th dose dependent rect. 19 1
938 163.13 temperature 10.0 270 > th dose independent rect. 12 10
939 163.13 temperature 10.0 270 > th dose independent rect. 22 14
940 163.13 atmosphere 995.0 270 > th dose independent rect. 22 14
946 163.13 precipitation 0.1 4320 > th dose dependent rect. 22 16
957 163.15 humidity 80.0 43200 > th dose independent rect. 24 1
958 163.15 precipitation 0.1 14400 > th dose independent rect. 19 1
969 163.16 humidity 80.0 43200 < th dose independent rect. 24 1
982 163.17 radiation 30.0 270 < th dose independent rect. 7 19
987 163.17 precipitation 0.1 4320 > th dose dependent rect. 22 8
991 163.18 wind 9.0 14400 < th dose independent rect. 9 2
994 163.18 wind 9.0 270 < th dose independent rect. 12 10