Os04g0599100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0599100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.78 | 0.321 | 7.98 | 1.29 | 0.566 | -1.55 | -0.314 | 1.87 | 0.108 | 15 | 1.18 | 757 | -- | -- |
| 49.97 | 0.329 | 7.98 | 1.23 | 0.423 | -1.41 | 0.205 | -- | 0.0828 | 14.7 | 1.414 | 793 | -- | -- |
| 46.56 | 0.318 | 7.98 | 1.27 | 0.459 | -1.54 | -- | 1.73 | 0.106 | 15.1 | 1.18 | 794 | -- | -- |
| 50.15 | 0.33 | 7.99 | 1.24 | 0.49 | -1.6 | -- | -- | 0.108 | 15.4 | 1.18 | 800 | -- | -- |
| 48.29 | 0.324 | 7.97 | 1.3 | -- | -1.32 | -- | 1.81 | 0.125 | -- | 1.42 | 929 | -- | -- |
| 53.36 | 0.342 | 7.98 | 1.14 | 0.868 | -- | -0.799 | -- | 0.0341 | 7.75 | -- | -- | -- | -- |
| 55.16 | 0.348 | 7.98 | 1.12 | 0.867 | -- | -- | -- | 0.0356 | 7.84 | -- | -- | -- | -- |
| 52.03 | 0.336 | 7.98 | 1.23 | -- | -1.32 | -- | -- | 0.131 | -- | 1.18 | 942 | -- | -- |
| 86.19 | 0.435 | 8.01 | -- | 0.747 | 0.296 | -- | -- | -0.1 | 6.2 | 1.18 | 800 | -- | -- |
| 95.89 | 0.458 | 8 | 1.13 | -- | -- | -- | -- | 0.0475 | -- | -- | -- | -- | -- |
| 88.39 | 0.44 | 8 | -- | 0.875 | -- | -- | -- | -0.0894 | 7.75 | -- | -- | -- | -- |
| 91.66 | 0.446 | 7.97 | -- | -- | -1.23 | -- | -- | 0.0611 | -- | 1.434 | 940 | -- | -- |
| 129.74 | 0.532 | 8.02 | -- | -- | -- | -- | -- | -0.0782 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.22 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 2 | 41.37 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 3 | 41.59 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 5 | 41.75 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 8 | 41.83 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 9 | 41.90 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 12 | 42.02 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 14 | 42.06 | radiation | 1.0 | 720 | > th | dose independent | rect. | 16 | 2 |
| 17 | 42.16 | temperature | 15.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 19 | 42.27 | radiation | 1.0 | 720 | < th | dose independent | rect. | 15 | 9 |
| 23 | 42.40 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 4 |
| 49 | 42.57 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 20 | 8 |
| 60 | 42.82 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 65 | 42.90 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 73 | 42.98 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 75 | 42.99 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 88 | 43.10 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 91 | 43.10 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 92 | 43.10 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 93 | 43.10 | radiation | 1.0 | 720 | < th | dose independent | rect. | 7 | 17 |
| 94 | 43.10 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 97 | 43.11 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 15 |
| 137 | 43.48 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 2 |
| 139 | 43.48 | radiation | 1.0 | 720 | > th | dose independent | rect. | 7 | 11 |
| 153 | 43.50 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 4 |
| 161 | 43.59 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 5 | 5 |
| 171 | 43.64 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 206 | 43.89 | humidity | 80.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 209 | 43.90 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 4 | 20 |
| 217 | 43.95 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 22 |
| 219 | 43.95 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 22 |
| 220 | 43.96 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 224 | 44.00 | wind | 5.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 225 | 44.01 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 227 | 44.02 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 235 | 44.07 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 236 | 44.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 2 |
| 237 | 44.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 243 | 44.11 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 245 | 44.11 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 246 | 44.11 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 249 | 44.11 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 250 | 44.11 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 251 | 44.11 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 255 | 44.11 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 256 | 44.11 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 260 | 44.13 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 263 | 44.14 | radiation | 1.0 | 720 | < th | dose independent | rect. | 4 | 20 |
| 264 | 44.14 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 265 | 44.14 | wind | 9.0 | 30 | < th | dose dependent | rect. | 5 | 4 |
| 266 | 44.14 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 275 | 44.19 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 4 |
| 277 | 44.19 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 285 | 44.22 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 287 | 44.22 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 288 | 44.22 | humidity | 50.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 290 | 44.22 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 291 | 44.22 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 295 | 44.24 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 304 | 44.29 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 360 | 44.40 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 2 |
| 362 | 44.41 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 368 | 44.43 | wind | 9.0 | 4320 | < th | dose independent | rect. | 5 | 4 |
| 483 | 44.64 | radiation | 1.0 | 720 | < th | dose dependent | sin | 17 | NA |
| 490 | 44.65 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 525 | 44.69 | wind | 1.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 536 | 44.72 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 22 |
| 545 | 44.74 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 5 | 4 |
| 552 | 44.76 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 563 | 44.79 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 18 | 10 |
| 578 | 44.83 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 21 |
| 584 | 44.84 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 585 | 44.84 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 5 | 4 |
| 622 | 44.95 | radiation | 1.0 | 720 | > th | dose independent | sin | 17 | NA |
| 624 | 44.95 | humidity | 90.0 | 720 | < th | dose independent | rect. | 16 | 2 |
| 629 | 44.96 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 638 | 44.97 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 649 | 45.00 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 11 | 11 |
| 655 | 45.02 | radiation | 1.0 | 720 | < th | dose independent | sin | 17 | NA |
| 672 | 45.04 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 20 | 9 |
| 723 | 45.11 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 24 | 4 |
| 755 | 45.17 | humidity | 50.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 777 | 45.19 | wind | 9.0 | 90 | < th | dose dependent | rect. | 18 | 10 |
| 790 | 45.23 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 819 | 45.30 | temperature | 15.0 | 270 | > th | dose independent | rect. | 22 | 13 |
| 835 | 45.33 | temperature | 25.0 | 720 | < th | dose independent | rect. | 11 | 11 |
| 889 | 45.44 | wind | 9.0 | 30 | < th | dose dependent | rect. | 9 | 20 |
| 893 | 45.45 | wind | 1.0 | 10 | > th | dose independent | rect. | 14 | 19 |