Os04g0599000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : EGF-like, type 3 domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0599000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : EGF-like, type 3 domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.2 | 0.343 | 9.37 | -0.119 | 0.791 | -0.608 | 0.114 | -0.0355 | 0.0286 | 0.794 | 21.2 | 916 | -- | -- |
| 53.2 | 0.34 | 9.37 | -0.127 | 0.791 | -0.606 | 0.123 | -- | 0.0265 | 0.791 | 21.27 | 915 | -- | -- |
| 53.25 | 0.34 | 9.37 | -0.114 | 0.792 | -0.608 | -- | -0.0699 | 0.03 | 0.81 | 21.2 | 915 | -- | -- |
| 53.25 | 0.34 | 9.37 | -0.127 | 0.788 | -0.597 | -- | -- | 0.0247 | 0.825 | 21.3 | 908 | -- | -- |
| 91 | 0.444 | 9.39 | -0.16 | -- | -0.77 | -- | 0.0499 | 0.0139 | -- | 21.3 | 895 | -- | -- |
| 64.87 | 0.378 | 9.34 | 0.102 | 0.88 | -- | 0.0594 | -- | 0.189 | 0.593 | -- | -- | -- | -- |
| 64.89 | 0.377 | 9.34 | 0.0999 | 0.88 | -- | -- | -- | 0.189 | 0.599 | -- | -- | -- | -- |
| 90.61 | 0.443 | 9.37 | -0.177 | -- | -0.81 | -- | -- | -0.0192 | -- | 21.33 | 898 | -- | -- |
| 53.61 | 0.341 | 9.37 | -- | 0.796 | -0.562 | -- | -- | 0.0447 | 0.806 | 21.36 | 870 | -- | -- |
| 113.39 | 0.498 | 9.32 | 0.131 | -- | -- | -- | -- | 0.204 | -- | -- | -- | -- | -- |
| 65.15 | 0.378 | 9.34 | -- | 0.881 | -- | -- | -- | 0.178 | 0.605 | -- | -- | -- | -- |
| 91.35 | 0.445 | 9.36 | -- | -- | -0.765 | -- | -- | 0.0112 | -- | 21.39 | 896 | -- | -- |
| 113.84 | 0.498 | 9.32 | -- | -- | -- | -- | -- | 0.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.03 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 10 |
| 2 | 51.08 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 22 | 12 |
| 5 | 51.16 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 7 | 51.24 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 10 | 51.30 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 12 | 51.33 | temperature | 10.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 14 | 51.39 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 24 | 51.53 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 56 | 51.88 | temperature | 30.0 | 720 | < th | dose dependent | sin | 7 | NA |
| 64 | 51.92 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 92 | 52.07 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 261 | 52.86 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 299 | 53.00 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 326 | 53.10 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 361 | 53.23 | temperature | 20.0 | 720 | > th | dose independent | sin | 9 | NA |
| 389 | 53.33 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 5 |
| 423 | 53.43 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 7 |
| 426 | 53.44 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 435 | 53.47 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 16 |
| 449 | 53.50 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 18 |
| 451 | 53.51 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 9 |
| 452 | 53.51 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 14 |
| 499 | 53.63 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 546 | 53.73 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 12 |
| 562 | 53.77 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 579 | 53.81 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 593 | 53.84 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 8 |
| 594 | 53.84 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 607 | 53.86 | temperature | 20.0 | 720 | < th | dose independent | sin | 8 | NA |
| 608 | 53.86 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 632 | 53.89 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 12 |
| 639 | 53.90 | wind | 1.0 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 660 | 53.93 | temperature | 20.0 | 720 | < th | dose independent | rect. | 22 | 17 |
| 678 | 53.96 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 681 | 53.97 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 688 | 53.98 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 690 | 53.98 | temperature | 20.0 | 720 | < th | dose independent | rect. | 21 | 14 |
| 697 | 53.98 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 701 | 53.99 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 702 | 53.99 | temperature | 20.0 | 720 | < th | dose independent | rect. | 22 | 11 |
| 728 | 54.03 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 743 | 54.05 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 763 | 54.07 | wind | 1.0 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 771 | 54.08 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 772 | 54.08 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 781 | 54.10 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 866 | 54.18 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 943 | 54.25 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 956 | 54.25 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 969 | 54.26 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 978 | 54.27 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 990 | 54.27 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 997 | 54.28 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 6 |