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Os04g0598900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Wall-associated kinase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.44 (0.0499) R2 : 0.766
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.04 (0.12) R2dC : 0.61 R2C : 0.677
β3 : 2.56 (0.205) R2dE : 0.0918 R2E : 0.135
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.672 (0.11) R2dN8 : 0.0282 R2N8 : -0.0115
σ : 0.92
deviance : 390.39
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_____
C
peak time of C : 10.6
E
wheather : radiation
threshold : 1.19
memory length : 4397
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
374.47 0.909 8.41 0.211 4.07 2.72 -2.01 1.78 -0.603 10.6 1.015 4384 -- --
378.67 0.906 8.41 -0.141 4 2.6 -2 -- -0.599 10.5 1.011 4409 -- --
390.87 0.921 8.41 0.0253 4.09 2.65 -- 1.23 -0.61 10.6 1.013 4383 -- --
389.86 0.92 8.44 -0.105 4.06 2.59 -- -- -0.669 10.6 1.19 4394 -- --
594.16 1.14 8.45 0.261 -- 3.06 -- -2.05 -0.241 -- 1.013 4383 -- --
501.44 1.05 8.32 0.492 4.29 -- -1.87 -- -0.146 10.7 -- -- -- --
516.03 1.06 8.32 0.416 4.3 -- -- -- -0.152 10.7 -- -- -- --
621.57 1.17 8.45 0.281 -- 3.05 -- -- -0.232 -- 1.013 4383 -- --
390.39 0.92 8.44 -- 4.04 2.56 -- -- -0.672 10.6 1.19 4397 -- --
1659.16 1.9 8.43 0.332 -- -- -- -- -0.176 -- -- -- -- --
520.59 1.07 8.33 -- 4.3 -- -- -- -0.198 10.7 -- -- -- --
623.66 1.17 8.45 -- -- 3.05 -- -- -0.263 -- 1.013 4383 -- --
1662.07 1.9 8.44 -- -- -- -- -- -0.212 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 371.05 radiation 1.0 14400 > th dose independent rect. 18 11
2 371.13 radiation 1.0 14400 > th dose independent rect. 18 1
12 372.87 radiation 1.0 14400 < th dose independent rect. 18 11
13 373.03 radiation 1.0 14400 < th dose independent rect. 18 2
16 373.25 radiation 1.0 14400 < th dose independent rect. 18 6
23 377.35 radiation 1.0 1440 < th dose dependent rect. 18 19
24 377.41 radiation 40.0 4320 < th dose dependent rect. 18 2
28 378.47 radiation 1.0 4320 < th dose dependent rect. 18 23
31 379.02 radiation 1.0 4320 > th dose independent rect. 18 23
35 379.46 radiation 1.0 4320 < th dose independent rect. 18 23
43 380.42 radiation 1.0 4320 > th dose independent rect. 18 21
45 380.67 radiation 1.0 4320 < th dose independent rect. 18 21
50 381.27 humidity 90.0 43200 > th dose independent rect. 9 1
53 381.48 radiation 1.0 4320 > th dose independent sin 2 NA
54 381.58 radiation 1.0 4320 > th dose independent rect. 16 21
55 381.59 radiation 1.0 4320 > th dose independent rect. 16 23
65 382.11 radiation 1.0 4320 > th dose independent rect. 14 22
70 382.35 radiation 1.0 4320 < th dose independent sin 2 NA
82 382.76 humidity 90.0 43200 < th dose independent rect. 9 1
86 382.84 radiation 1.0 4320 > th dose independent no NA NA
87 382.84 radiation 1.0 4320 > th dose independent rect. 4 15
132 382.84 radiation 1.0 1440 < th dose dependent sin 10 NA
169 383.31 radiation 1.0 4320 < th dose independent rect. 16 23
172 383.35 radiation 1.0 4320 < th dose independent rect. 16 21
173 383.36 radiation 1.0 4320 > th dose independent rect. 5 12
193 383.53 radiation 1.0 4320 < th dose dependent rect. 5 5
196 383.62 humidity 80.0 43200 > th dose dependent rect. 10 1
199 383.69 radiation 1.0 4320 < th dose independent rect. 5 12
200 383.69 radiation 1.0 4320 < th dose independent rect. 3 14
205 383.75 radiation 1.0 4320 < th dose dependent rect. 18 2
211 383.84 radiation 1.0 4320 < th dose independent rect. 14 22
213 383.86 radiation 1.0 4320 < th dose independent rect. 23 18
221 383.95 radiation 1.0 4320 < th dose dependent rect. 5 12
222 383.96 radiation 1.0 4320 < th dose dependent sin 3 NA
223 383.96 radiation 1.0 4320 < th dose dependent rect. 18 4
226 383.97 radiation 1.0 4320 < th dose dependent rect. 18 6
230 384.03 radiation 1.0 4320 < th dose dependent rect. 5 8
231 384.03 radiation 1.0 14400 < th dose dependent rect. 18 10
236 384.08 radiation 1.0 14400 < th dose dependent rect. 18 8
258 384.36 radiation 1.0 4320 < th dose independent rect. 3 17
269 384.42 radiation 1.0 4320 < th dose independent rect. 3 21
271 384.42 radiation 40.0 14400 < th dose dependent rect. 18 11
284 384.47 radiation 1.0 4320 < th dose independent rect. 23 21
309 384.55 radiation 1.0 4320 < th dose independent no NA NA
320 384.57 radiation 1.0 4320 < th dose dependent rect. 3 14
338 384.65 radiation 1.0 4320 < th dose dependent rect. 21 20
347 384.74 radiation 1.0 4320 > th dose independent sin 11 NA
365 384.94 atmosphere 1005.0 43200 > th dose independent rect. 13 1
369 385.00 radiation 1.0 4320 < th dose dependent rect. 16 21
370 385.01 radiation 1.0 1440 < th dose dependent rect. 3 10
374 385.04 atmosphere 1005.0 43200 < th dose independent rect. 13 1
380 385.10 radiation 1.0 4320 < th dose dependent rect. 5 19
381 385.11 radiation 1.0 4320 < th dose dependent rect. 5 15
384 385.12 radiation 1.0 4320 < th dose dependent rect. 16 23
388 385.13 radiation 40.0 14400 < th dose dependent rect. 18 6
390 385.13 radiation 1.0 4320 < th dose dependent rect. 14 21
399 385.18 radiation 1.0 4320 < th dose dependent rect. 5 23
412 385.24 radiation 1.0 4320 < th dose dependent rect. 3 7
449 385.42 wind 9.0 43200 > th dose independent rect. 16 1
455 385.44 radiation 1.0 4320 < th dose dependent rect. 21 13
458 385.45 radiation 1.0 4320 < th dose dependent rect. 21 16
467 385.52 radiation 1.0 1440 < th dose dependent rect. 23 14
488 385.65 radiation 1.0 4320 < th dose dependent rect. 3 21
492 385.66 radiation 1.0 4320 < th dose dependent rect. 3 17
525 385.73 radiation 1.0 4320 < th dose dependent rect. 21 23
542 385.78 radiation 1.0 4320 < th dose dependent no NA NA
551 385.81 humidity 90.0 43200 < th dose independent rect. 19 2
572 385.87 humidity 90.0 43200 > th dose independent rect. 20 1
580 385.90 radiation 1.0 4320 < th dose independent sin 11 NA
583 385.90 radiation 1.0 4320 < th dose dependent rect. 9 23
587 385.94 precipitation 0.1 43200 > th dose independent rect. 16 1
616 386.11 precipitation 0.1 43200 > th dose independent rect. 15 4
624 386.17 radiation 1.0 4320 < th dose dependent rect. 7 23
629 386.21 radiation 1.0 14400 < th dose dependent rect. 7 21
630 386.22 radiation 1.0 14400 < th dose independent rect. 7 13
632 386.23 radiation 1.0 14400 < th dose dependent rect. 7 19
644 386.28 atmosphere 1005.0 43200 > th dose independent rect. 13 4
645 386.28 precipitation 0.1 43200 < th dose independent rect. 15 4
647 386.28 precipitation 0.1 43200 < th dose dependent rect. 15 4
649 386.29 radiation 1.0 14400 < th dose independent rect. 7 21
653 386.32 precipitation 0.1 43200 < th dose independent rect. 16 1
655 386.32 precipitation 0.1 43200 < th dose dependent rect. 16 1
669 386.48 radiation 1.0 14400 < th dose dependent rect. 7 15
673 386.49 radiation 1.0 14400 < th dose dependent rect. 7 13
685 386.60 atmosphere 1005.0 43200 < th dose independent rect. 13 4
725 386.75 atmosphere 1005.0 43200 > th dose independent rect. 16 1
741 386.82 humidity 80.0 43200 > th dose independent rect. 10 8
809 387.11 precipitation 0.1 43200 > th dose dependent rect. 15 2
818 387.15 radiation 1.0 14400 < th dose dependent rect. 14 14
820 387.17 radiation 1.0 14400 < th dose dependent rect. 14 12
871 387.35 radiation 1.0 14400 < th dose dependent sin 17 NA
898 387.46 radiation 1.0 14400 < th dose dependent rect. 14 8
901 387.47 radiation 1.0 14400 < th dose dependent rect. 14 6
916 387.53 humidity 80.0 43200 > th dose independent rect. 12 6
978 387.67 humidity 80.0 43200 > th dose independent rect. 10 5