Os04g0598800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Wall-associated kinase-like protein.
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Os04g0598800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Wall-associated kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.78 | 0.42 | 6.82 | 0.546 | 2.16 | 1.44 | -0.419 | 2.24 | 0.358 | 0.236 | 21.49 | 1520 | -- | -- |
| 103.19 | 0.473 | 6.85 | 0.538 | 2.28 | 1.14 | -0.3 | -- | 0.312 | 0.117 | 22.88 | 1996 | -- | -- |
| 80.52 | 0.418 | 6.82 | 0.554 | 2.16 | 1.44 | -- | 2.23 | 0.36 | 0.231 | 21.48 | 1528 | -- | -- |
| 91 | 0.444 | 6.89 | 0.0651 | 2.32 | 1.19 | -- | -- | 0.262 | 0.299 | 22.2 | 1624 | -- | -- |
| 348.46 | 0.869 | 6.78 | 0.594 | -- | 1.58 | -- | 2.26 | 0.303 | -- | 22.11 | 2364 | -- | -- |
| 138.33 | 0.551 | 6.81 | 0.494 | 2.17 | -- | -0.479 | -- | 0.594 | 0.265 | -- | -- | -- | -- |
| 139.32 | 0.553 | 6.81 | 0.513 | 2.17 | -- | -- | -- | 0.597 | 0.258 | -- | -- | -- | -- |
| 278.82 | 0.778 | 6.89 | -0.4 | -- | 1.8 | -- | -- | -0.113 | -- | 24.9 | 918 | -- | -- |
| 89.38 | 0.44 | 6.88 | -- | 2.19 | 1.22 | -- | -- | 0.198 | 0.263 | 22.17 | 1633 | -- | -- |
| 435.96 | 0.976 | 6.76 | 0.584 | -- | -- | -- | -- | 0.63 | -- | -- | -- | -- | -- |
| 146.24 | 0.566 | 6.82 | -- | 2.18 | -- | -- | -- | 0.54 | 0.271 | -- | -- | -- | -- |
| 271.22 | 0.767 | 6.93 | -- | -- | 2.01 | -- | -- | -0.0942 | -- | 24.92 | 904 | -- | -- |
| 444.96 | 0.985 | 6.78 | -- | -- | -- | -- | -- | 0.565 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 2 | 79.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 2 |
| 6 | 79.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 4 |
| 73 | 82.32 | temperature | 25 | 720 | < th | dose dependent | sin | 16 | NA |
| 79 | 82.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 11 |
| 81 | 82.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 11 |
| 122 | 82.87 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 165 | 83.26 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 169 | 83.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 215 | 83.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 219 | 83.49 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 230 | 83.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 17 |
| 303 | 83.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 2 |
| 325 | 84.02 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 519 | 84.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 575 | 84.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 690 | 85.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 721 | 85.37 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 731 | 85.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 739 | 85.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 780 | 85.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 788 | 85.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 793 | 85.64 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 905 | 86.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 984 | 86.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |