Os04g0598600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os04g0598600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 215.82 | 0.69 | 5.8 | 0.192 | 2.79 | -1.33 | 0.0556 | -2.24 | 0.183 | 23.3 | 26.5 | 8 | -- | -- |
| 217.05 | 0.686 | 5.77 | 0.385 | 2.76 | -1.5 | 0.2 | -- | 0.235 | 23.3 | 26.3 | 7 | -- | -- |
| 215.83 | 0.684 | 5.8 | 0.189 | 2.79 | -1.33 | -- | -2.27 | 0.182 | 23.3 | 26.5 | 7 | -- | -- |
| 217.15 | 0.686 | 5.77 | 0.391 | 2.77 | -1.5 | -- | -- | 0.232 | 23.3 | 26.39 | 5 | -- | -- |
| 602.61 | 1.14 | 5.58 | 1.05 | -- | -3.3 | -- | 2.49 | 0.667 | -- | 24.04 | 2 | -- | -- |
| 249.33 | 0.74 | 5.78 | 0.202 | 3.08 | -- | 0.417 | -- | 0.19 | 23.8 | -- | -- | -- | -- |
| 250.08 | 0.741 | 5.78 | 0.186 | 3.08 | -- | -- | -- | 0.188 | 23.8 | -- | -- | -- | -- |
| 604.61 | 1.15 | 5.63 | 0.739 | -- | -3.11 | -- | -- | 0.576 | -- | 24.02 | 4 | -- | -- |
| 220.96 | 0.692 | 5.78 | -- | 2.79 | -1.42 | -- | -- | 0.182 | 23.4 | 26.51 | 5 | -- | -- |
| 847.03 | 1.36 | 5.71 | 0.276 | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
| 250.99 | 0.741 | 5.79 | -- | 3.08 | -- | -- | -- | 0.168 | 23.8 | -- | -- | -- | -- |
| 618.48 | 1.16 | 5.66 | -- | -- | -3 | -- | -- | 0.476 | -- | 24.1 | 4 | -- | -- |
| 849.05 | 1.36 | 5.72 | -- | -- | -- | -- | -- | 0.197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 208.90 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 7 | 210.03 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 9 | 210.12 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 13 |
| 139 | 214.11 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 153 | 214.70 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 5 | 10 |
| 162 | 214.81 | temperature | 25 | 270 | > th | dose independent | rect. | 2 | 14 |
| 177 | 215.03 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 16 |
| 185 | 215.23 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 4 | 5 |
| 203 | 215.64 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 293 | 216.77 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 302 | 216.82 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 319 | 216.98 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 377 | 217.47 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 7 | 10 |
| 386 | 217.52 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 407 | 217.63 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 431 | 218.00 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 2 |
| 456 | 218.27 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 518 | 218.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 525 | 219.02 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 6 | 12 |
| 559 | 219.31 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 562 | 219.40 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 664 | 220.44 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 707 | 220.66 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 755 | 220.85 | atmosphere | 1010 | 30 | < th | dose dependent | sin | 0 | NA |
| 763 | 220.88 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 2 | 14 |
| 810 | 221.09 | atmosphere | 1015 | 270 | < th | dose dependent | sin | 2 | NA |
| 824 | 221.21 | atmosphere | 995 | 90 | > th | dose dependent | sin | 1 | NA |
| 832 | 221.26 | atmosphere | 1015 | 720 | < th | dose dependent | sin | 5 | NA |
| 877 | 221.65 | temperature | 25 | 30 | > th | dose independent | rect. | 5 | 13 |
| 881 | 221.67 | atmosphere | 995 | 270 | > th | dose dependent | sin | 3 | NA |
| 898 | 221.78 | radiation | 10 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 940 | 222.05 | temperature | 30 | 10 | < th | dose dependent | sin | 0 | NA |
| 968 | 222.24 | atmosphere | 995 | 720 | > th | dose dependent | sin | 7 | NA |
| 972 | 222.26 | temperature | 30 | 30 | < th | dose independent | rect. | 7 | 23 |