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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0598500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Wall-associated kinase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.73 (0.0472) R2 : 0.315
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.16 (0.112) R2dC : 0.152 R2C : 0.114
β3 : -1.46 (0.132) R2dE : 0.227 R2E : 0.148
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.307 (0.105) R2dN8 : 0.0181 R2N8 : -0.0298
σ : 0.87
deviance : 348.8
__
_____
C
peak time of C : 22.5
E
wheather : temperature
threshold : 24.79
memory length : 8279
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
324.8 0.847 4.65 0.735 1.2 -2.02 -0.28 6.65 0.0788 22.7 26.56 1247 -- --
336.87 0.855 4.76 -0.717 1.09 -1.26 -0.14 -- 0.139 22.6 25.3 8306 -- --
325.03 0.84 4.65 0.791 1.2 -2.06 -- 7.06 0.0411 22.6 26.92 1247 -- --
336.8 0.855 4.75 -0.705 1.11 -1.3 -- -- 0.169 22.5 25.11 8286 -- --
402.75 0.935 4.58 1.02 -- -1.85 -- 7.15 0.143 -- 26.6 1455 -- --
404.89 0.943 4.85 -1.25 1.02 -- -0.298 -- -0.279 22.2 -- -- -- --
405.24 0.943 4.85 -1.24 1.02 -- -- -- -0.278 22.2 -- -- -- --
407.35 0.94 4.72 -0.626 -- -1.25 -- -- 0.186 -- 25 8688 -- --
348.8 0.87 4.73 -- 1.16 -1.46 -- -- 0.307 22.5 24.79 8279 -- --
468.27 1.01 4.82 -1.22 -- -- -- -- -0.276 -- -- -- -- --
445.45 0.987 4.82 -- 1.01 -- -- -- -0.141 22.1 -- -- -- --
417.79 0.952 4.68 -- -- -1.47 -- -- 0.358 -- 22.62 8740 -- --
507.58 1.05 4.79 -- -- -- -- -- -0.141 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 308.86 radiation 30 14400 > th dose independent rect. 16 1
16 312.94 radiation 30 14400 > th dose dependent rect. 16 1
31 313.35 wind 9 43200 < th dose independent rect. 13 1
32 313.53 wind 9 43200 > th dose dependent rect. 13 2
33 315.19 wind 9 43200 > th dose independent rect. 10 5
34 315.77 wind 9 43200 < th dose independent rect. 10 5
35 316.68 wind 9 43200 > th dose independent rect. 13 1
41 317.80 wind 7 43200 > th dose dependent rect. 10 5
151 324.91 wind 9 43200 < th dose independent rect. 3 12
154 324.99 wind 7 43200 > th dose independent rect. 5 11
158 325.03 wind 9 43200 < th dose independent rect. 24 15
166 325.31 wind 7 43200 < th dose independent rect. 5 11
168 325.40 wind 7 43200 > th dose dependent rect. 3 12
189 325.83 radiation 1 14400 < th dose dependent rect. 4 1
194 325.92 radiation 40 43200 > th dose dependent rect. 10 1
195 325.92 wind 7 43200 > th dose dependent rect. 24 15
212 326.32 wind 9 43200 > th dose independent rect. 24 15
235 326.72 radiation 1 43200 > th dose dependent rect. 5 1
247 326.98 wind 9 43200 > th dose independent rect. 13 8
249 326.98 wind 7 43200 > th dose independent rect. 24 17
251 326.99 wind 7 43200 > th dose independent sin 2 NA
261 327.10 wind 7 43200 < th dose independent sin 1 NA
309 327.49 wind 9 43200 < th dose independent rect. 13 8
316 327.66 humidity 60 4320 < th dose dependent rect. 16 3
353 328.04 wind 9 43200 > th dose independent rect. 13 12
360 328.14 wind 1 43200 < th dose dependent rect. 7 1
363 328.23 wind 9 43200 > th dose independent rect. 19 20
365 328.25 wind 9 43200 > th dose dependent rect. 13 10
377 328.36 humidity 80 43200 < th dose dependent rect. 22 1
383 328.48 wind 9 43200 < th dose dependent rect. 11 1
388 328.51 humidity 50 4320 > th dose independent rect. 16 1
392 328.53 humidity 90 43200 > th dose independent rect. 22 7
409 328.80 radiation 40 43200 < th dose independent rect. 15 20
410 328.83 radiation 10 43200 < th dose independent rect. 5 2
415 328.91 humidity 70 14400 < th dose independent rect. 17 15
426 329.03 radiation 10 43200 < th dose independent rect. 3 4
427 329.03 radiation 10 43200 < th dose independent rect. 1 6
436 329.09 radiation 10 43200 < th dose independent rect. 19 12
437 329.09 wind 7 43200 > th dose dependent rect. 11 14
444 329.12 wind 1 43200 > th dose dependent rect. 11 1
445 329.13 radiation 40 43200 < th dose independent rect. 10 1
453 329.19 wind 9 43200 > th dose independent rect. 11 19
465 329.34 humidity 70 14400 < th dose independent rect. 18 1
482 329.53 radiation 10 43200 < th dose independent rect. 17 15
503 329.77 wind 9 43200 < th dose independent rect. 19 20
511 329.86 humidity 70 14400 < th dose independent rect. 17 3
520 329.99 humidity 90 43200 < th dose independent rect. 21 7
540 330.14 radiation 40 43200 < th dose dependent rect. 3 3
541 330.16 humidity 70 14400 < th dose independent rect. 17 5
550 330.16 radiation 40 43200 < th dose dependent rect. 1 5
556 330.23 wind 9 43200 > th dose dependent rect. 13 12
558 330.26 wind 9 43200 < th dose independent rect. 13 12
599 330.53 humidity 90 43200 > th dose independent rect. 3 3
608 330.60 wind 9 43200 < th dose independent rect. 11 19
621 330.67 radiation 10 43200 < th dose dependent rect. 19 11
625 330.70 radiation 40 43200 < th dose independent sin 11 NA
629 330.72 wind 9 43200 > th dose independent rect. 13 17
721 331.22 temperature 25 1440 > th dose dependent rect. 11 8
733 331.31 temperature 25 1440 > th dose dependent rect. 15 4
742 331.36 wind 9 43200 > th dose independent sin 20 NA
749 331.39 humidity 90 43200 > th dose independent rect. 2 5
751 331.39 wind 9 43200 > th dose dependent rect. 11 19
756 331.42 temperature 25 1440 > th dose dependent rect. 13 6
758 331.43 temperature 25 1440 > th dose dependent rect. 16 1
768 331.51 wind 7 43200 > th dose dependent sin 3 NA
774 331.53 wind 9 43200 < th dose independent sin 20 NA
776 331.53 temperature 25 1440 > th dose dependent rect. 6 13
815 331.69 radiation 40 43200 < th dose independent rect. 4 7
824 331.72 radiation 40 43200 < th dose independent rect. 7 4
862 331.80 temperature 25 1440 > th dose dependent sin 21 NA
939 332.07 radiation 40 43200 > th dose dependent rect. 15 20
968 332.20 radiation 40 43200 > th dose dependent rect. 7 4
1000 332.27 radiation 1 43200 > th dose dependent rect. 18 13