Os04g0598300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Floricaula/leafy-like 2.
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Os04g0598300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Floricaula/leafy-like 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.8 | 0.44 | 2.82 | -0.25 | 0.144 | -0.263 | -0.475 | -0.826 | -0.0441 | 9.09 | 20 | 370 | -- | -- |
| 88.96 | 0.443 | 2.8 | -0.139 | 0.196 | -0.177 | -0.292 | -- | -0.00793 | 9.86 | 21.02 | 453 | -- | -- |
| 88.44 | 0.438 | 2.82 | -0.253 | 0.154 | -0.244 | -- | -0.752 | -0.043 | 9.69 | 20.04 | 310 | -- | -- |
| 89.29 | 0.443 | 2.8 | -0.149 | 0.198 | -0.18 | -- | -- | -0.00807 | 9.81 | 21.02 | 453 | -- | -- |
| 89.8 | 0.441 | 2.83 | -0.258 | -- | -0.259 | -- | -0.783 | -0.0425 | -- | 20 | 340 | -- | -- |
| 90.49 | 0.446 | 2.81 | -0.183 | 0.166 | -- | -0.315 | -- | -0.0475 | 9.14 | -- | -- | -- | -- |
| 90.84 | 0.446 | 2.81 | -0.195 | 0.169 | -- | -- | -- | -0.0481 | 8.88 | -- | -- | -- | -- |
| 90.08 | 0.442 | 2.8 | -0.143 | -- | -0.205 | -- | -- | 0.0381 | -- | 24.5 | 560 | -- | -- |
| 89.84 | 0.441 | 2.79 | -- | 0.136 | -0.199 | -- | -- | 0.0295 | 9.22 | 22 | 540 | -- | -- |
| 92.46 | 0.449 | 2.82 | -0.195 | -- | -- | -- | -- | -0.0469 | -- | -- | -- | -- | -- |
| 91.84 | 0.448 | 2.81 | -- | 0.168 | -- | -- | -- | -0.0264 | 8.97 | -- | -- | -- | -- |
| 90.45 | 0.443 | 2.79 | -- | -- | -0.234 | -- | -- | 0.062 | -- | 24.55 | 580 | -- | -- |
| 93.46 | 0.451 | 2.81 | -- | -- | -- | -- | -- | -0.0253 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.56 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 1 | 1 |
| 2 | 83.64 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 14 | 84.90 | temperature | 20.0 | 90 | < th | dose independent | rect. | 24 | 1 |
| 21 | 85.48 | temperature | 20.0 | 90 | < th | dose independent | rect. | 24 | 12 |
| 23 | 85.53 | temperature | 20.0 | 10 | < th | dose independent | rect. | 6 | 2 |
| 27 | 85.56 | temperature | 20.0 | 90 | < th | dose independent | rect. | 24 | 17 |
| 34 | 85.64 | temperature | 20.0 | 90 | < th | dose independent | rect. | 24 | 22 |
| 35 | 85.67 | temperature | 20.0 | 10 | < th | dose independent | rect. | 6 | 6 |
| 37 | 85.67 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 6 | 2 |
| 40 | 85.75 | temperature | 20.0 | 90 | < th | dose independent | rect. | 24 | 9 |
| 43 | 85.82 | temperature | 20.0 | 10 | < th | dose independent | rect. | 6 | 12 |
| 47 | 85.83 | temperature | 20.0 | 10 | < th | dose independent | rect. | 6 | 10 |
| 55 | 85.95 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 6 | 8 |
| 58 | 85.97 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 6 | 6 |
| 150 | 86.24 | wind | 5.0 | 10 | > th | dose independent | rect. | 8 | 1 |
| 154 | 86.24 | wind | 5.0 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 208 | 86.40 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 3 |
| 209 | 86.40 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 3 |
| 263 | 86.67 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 265 | 86.69 | wind | 5.0 | 10 | > th | dose independent | rect. | 10 | 1 |
| 270 | 86.69 | wind | 5.0 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 294 | 86.84 | temperature | 20.0 | 90 | < th | dose independent | sin | 2 | NA |
| 304 | 86.88 | temperature | 20.0 | 90 | > th | dose independent | sin | 4 | NA |
| 307 | 86.91 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 24 | 11 |
| 316 | 86.98 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 24 | 22 |
| 323 | 87.07 | humidity | 90.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 331 | 87.14 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 24 | 9 |
| 334 | 87.15 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 21 |
| 354 | 87.20 | wind | 9.0 | 90 | > th | dose dependent | rect. | 22 | 12 |
| 358 | 87.20 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 24 | 18 |
| 365 | 87.22 | wind | 3.0 | 90 | > th | dose dependent | rect. | 8 | 3 |
| 376 | 87.25 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 397 | 87.32 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 411 | 87.37 | temperature | 20.0 | 90 | > th | dose independent | rect. | 1 | 14 |
| 449 | 87.46 | temperature | 20.0 | 90 | < th | dose independent | rect. | 5 | 21 |
| 481 | 87.50 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 525 | 87.57 | temperature | 20.0 | 90 | < th | dose independent | rect. | 20 | 12 |
| 551 | 87.61 | wind | 3.0 | 10 | > th | dose independent | rect. | 23 | 13 |
| 553 | 87.61 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 572 | 87.64 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 574 | 87.65 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 23 | 1 |
| 586 | 87.68 | temperature | 20.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 590 | 87.69 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 21 | 1 |
| 599 | 87.71 | wind | 3.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 619 | 87.74 | temperature | 20.0 | 90 | < th | dose independent | rect. | 21 | 5 |
| 631 | 87.75 | temperature | 20.0 | 90 | < th | dose independent | rect. | 24 | 5 |
| 651 | 87.78 | temperature | 20.0 | 90 | < th | dose independent | rect. | 20 | 18 |
| 652 | 87.78 | temperature | 20.0 | 270 | > th | dose independent | rect. | 9 | 23 |
| 667 | 87.80 | humidity | 80.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 669 | 87.80 | temperature | 20.0 | 90 | < th | dose independent | rect. | 5 | 16 |
| 689 | 87.82 | wind | 3.0 | 10 | > th | dose independent | rect. | 23 | 16 |
| 699 | 87.83 | temperature | 20.0 | 90 | < th | dose independent | rect. | 13 | 19 |
| 705 | 87.83 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 15 | 18 |
| 708 | 87.84 | temperature | 20.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 713 | 87.84 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 23 |
| 714 | 87.84 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 23 |
| 724 | 87.85 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 24 | 5 |
| 725 | 87.85 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 20 | 5 |
| 774 | 87.90 | wind | 3.0 | 10 | > th | dose independent | rect. | 8 | 4 |
| 780 | 87.90 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 20 | 10 |
| 797 | 87.92 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 808 | 87.92 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 9 | 13 |
| 814 | 87.93 | temperature | 20.0 | 270 | > th | dose independent | no | NA | NA |
| 874 | 87.97 | wind | 3.0 | 10 | > th | dose independent | rect. | 23 | 1 |
| 891 | 87.98 | temperature | 20.0 | 90 | < th | dose independent | no | NA | NA |
| 952 | 88.02 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 8 |