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Os04g0598200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 60S ribosomal protein L12.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.5 (0.0268) R2 : 0.498
β1 : 0.924 (0.0981) R2dD : 0.101 R2D : 0.086
β2 : 1.35 (0.0699) R2dC : 0.411 R2C : 0.399
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.118 (0.0572) R2dN8 : 0.00624 R2N8 : -0.00739
σ : 0.504
deviance : 115.61
__
_____
C
peak time of C : 17.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
98.99 0.467 13.6 0.951 1.32 -0.883 1 -1.55 0.0777 18.5 39.49 71 -- --
103.11 0.473 13.6 0.963 1.31 -0.711 0.923 -- 0.0919 18.4 37.5 72 -- --
101.46 0.469 13.6 0.938 1.32 -0.856 -- -1.48 0.0769 18.5 39.5 72 -- --
105.19 0.478 13.6 0.952 1.31 -0.707 -- -- 0.0858 18.4 37.44 72 -- --
152.2 0.575 13.5 0.597 -- -1.1 -- 0.102 0.0547 -- 20.06 693 -- --
113.73 0.5 13.5 0.929 1.34 -- 0.877 -- 0.114 17.8 -- -- -- --
115.61 0.504 13.5 0.924 1.35 -- -- -- 0.118 17.8 -- -- -- --
120.54 0.511 13.6 0.746 -- -1.49 -- -- -0.0209 -- 0.1076 704 -- --
126.29 0.523 13.6 -- 1.36 -0.63 -- -- -0.025 18.5 30.35 92 -- --
209.9 0.677 13.5 0.882 -- -- -- -- 0.0857 -- -- -- -- --
138.1 0.55 13.6 -- 1.33 -- -- -- 0.0147 17.8 -- -- -- --
134.26 0.54 13.6 -- -- -1.64 -- -- -0.0704 -- 0.009688 707 -- --
230.4 0.708 13.5 -- -- -- -- -- -0.0121 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 88.77 temperature 15.0 90 > th dose dependent rect. 8 7
2 88.82 temperature 15.0 10 > th dose dependent rect. 9 6
25 91.07 temperature 15.0 270 > th dose dependent rect. 9 1
49 92.55 temperature 10.0 10 > th dose dependent rect. 9 19
50 92.58 radiation 40.0 90 < th dose independent rect. 4 15
69 93.22 radiation 40.0 10 < th dose independent rect. 4 16
74 93.48 wind 5.0 30 < th dose independent rect. 4 5
76 93.52 temperature 10.0 30 > th dose dependent rect. 4 5
78 93.64 wind 5.0 270 < th dose independent rect. 4 1
94 94.10 atmosphere 1000.0 10 > th dose dependent rect. 4 5
95 94.15 temperature 10.0 43200 > th dose independent rect. 10 6
97 94.20 wind 1.0 30 > th dose independent rect. 9 6
100 94.25 wind 5.0 270 < th dose independent rect. 3 4
102 94.27 humidity 60.0 270 > th dose independent rect. 18 9
103 94.27 radiation 1.0 270 < th dose independent rect. 18 9
105 94.29 humidity 90.0 10 < th dose independent rect. 4 5
110 94.33 temperature 30.0 270 < th dose independent rect. 18 9
111 94.36 atmosphere 1005.0 270 > th dose dependent rect. 4 1
112 94.37 humidity 90.0 90 < th dose independent rect. 8 7
115 94.39 humidity 90.0 10 < th dose independent rect. 9 6
119 94.45 radiation 1.0 10 > th dose independent rect. 9 6
120 94.46 radiation 40.0 270 < th dose independent rect. 2 15
129 94.57 precipitation 0.1 30 < th dose independent rect. 9 19
130 94.57 precipitation 0.1 30 < th dose dependent rect. 9 19
131 94.59 precipitation 0.1 30 < th dose independent rect. 4 5
132 94.59 precipitation 0.1 90 < th dose independent rect. 8 7
133 94.59 precipitation 0.1 30 < th dose dependent rect. 4 5
134 94.59 precipitation 0.1 90 < th dose dependent rect. 8 7
135 94.59 radiation 1.0 270 < th dose dependent rect. 18 9
139 94.61 temperature 10.0 30 > th dose independent rect. 4 5
141 94.61 temperature 30.0 30 < th dose independent rect. 4 5
142 94.61 humidity 50.0 30 > th dose independent rect. 4 5
144 94.61 atmosphere 995.0 30 > th dose independent rect. 4 5
145 94.61 atmosphere 1015.0 30 < th dose independent rect. 4 5
146 94.61 temperature 10.0 10 > th dose independent rect. 9 6
148 94.61 atmosphere 995.0 10 > th dose independent rect. 9 6
149 94.61 atmosphere 1015.0 10 < th dose independent rect. 9 6
150 94.61 precipitation 0.1 10 < th dose independent rect. 9 6
151 94.61 temperature 10.0 10 > th dose independent rect. 15 18
152 94.61 temperature 10.0 30 > th dose independent rect. 9 19
154 94.61 precipitation 0.1 10 < th dose dependent rect. 9 6
156 94.62 radiation 30.0 90 < th dose independent rect. 15 18
168 94.69 wind 9.0 30 < th dose independent rect. 9 19
177 94.73 temperature 10.0 270 > th dose independent rect. 18 9
182 94.73 temperature 10.0 270 > th dose independent rect. 3 15
183 94.73 atmosphere 1015.0 270 < th dose independent rect. 3 15
185 94.76 atmosphere 995.0 270 > th dose independent rect. 18 9
189 94.79 temperature 10.0 1440 > th dose independent rect. 10 6
193 94.79 temperature 10.0 1440 > th dose independent rect. 16 18
196 94.81 wind 9.0 10 < th dose independent rect. 9 6
197 94.81 wind 9.0 270 < th dose independent rect. 18 9
209 94.86 wind 9.0 30 < th dose independent rect. 15 18
222 94.89 radiation 30.0 90 < th dose independent rect. 3 6
228 94.94 precipitation 0.1 270 < th dose independent rect. 3 15
229 94.94 precipitation 0.1 270 < th dose dependent rect. 3 15
240 95.04 atmosphere 995.0 30 > th dose independent rect. 9 19
252 95.12 temperature 10.0 1440 > th dose independent rect. 5 5
255 95.12 atmosphere 995.0 1440 > th dose independent rect. 5 5
256 95.12 atmosphere 1015.0 1440 < th dose independent rect. 5 5
258 95.12 temperature 10.0 1440 > th dose independent rect. 10 19
269 95.21 atmosphere 1000.0 30 > th dose independent rect. 20 8
273 95.25 wind 9.0 270 < th dose independent rect. 3 15
274 95.27 radiation 1.0 90 > th dose dependent rect. 8 7
280 95.31 radiation 40.0 10 < th dose independent rect. 15 18
286 95.37 precipitation 0.1 270 < th dose independent rect. 4 1
287 95.37 radiation 1.0 270 < th dose dependent rect. 4 1
288 95.37 precipitation 0.1 270 < th dose dependent rect. 4 1
290 95.37 radiation 40.0 90 < th dose dependent rect. 4 15
291 95.39 temperature 10.0 270 > th dose dependent rect. 3 4
296 95.42 precipitation 0.1 10 < th dose independent rect. 15 18
298 95.42 precipitation 0.1 10 < th dose dependent rect. 15 18
302 95.46 humidity 50.0 30 > th dose independent rect. 9 19
311 95.54 wind 9.0 30 < th dose dependent rect. 4 5
322 95.59 humidity 50.0 30 > th dose independent rect. 9 6
324 95.59 atmosphere 995.0 10 > th dose independent rect. 15 18
328 95.61 precipitation 0.1 270 < th dose independent rect. 18 9
331 95.61 precipitation 0.1 270 < th dose dependent rect. 18 9
337 95.66 temperature 10.0 270 > th dose independent rect. 4 1
339 95.66 temperature 30.0 270 < th dose independent rect. 4 1
340 95.66 humidity 50.0 270 > th dose independent rect. 4 1
343 95.66 atmosphere 995.0 270 > th dose independent rect. 4 1
344 95.66 atmosphere 1010.0 270 < th dose independent rect. 4 1
346 95.66 radiation 20.0 270 < th dose independent rect. 4 1
352 95.66 temperature 10.0 270 > th dose independent rect. 5 23
356 95.67 radiation 40.0 270 < th dose dependent rect. 4 1
363 95.70 precipitation 0.1 270 < th dose independent rect. 3 4
365 95.70 precipitation 0.1 270 < th dose dependent rect. 3 4
379 95.72 radiation 1.0 270 > th dose dependent rect. 8 3
387 95.75 atmosphere 1005.0 270 > th dose dependent rect. 3 3
391 95.76 radiation 1.0 270 < th dose independent rect. 4 1
393 95.76 radiation 10.0 270 < th dose independent rect. 3 4
399 95.78 radiation 1.0 270 > th dose dependent rect. 9 1
405 95.80 radiation 30.0 270 < th dose dependent rect. 3 4
408 95.81 radiation 40.0 270 < th dose independent rect. 11 21
418 95.85 wind 9.0 270 < th dose dependent rect. 4 1
424 95.87 temperature 10.0 270 > th dose dependent rect. 4 1
460 96.01 wind 9.0 270 < th dose independent rect. 7 20
462 96.02 radiation 30.0 90 < th dose independent rect. 3 8
477 96.05 temperature 10.0 270 > th dose independent rect. 3 4
479 96.05 temperature 30.0 270 < th dose independent rect. 3 4
480 96.05 humidity 50.0 270 > th dose independent rect. 3 4
482 96.05 atmosphere 995.0 270 > th dose independent rect. 3 4
483 96.05 atmosphere 1015.0 270 < th dose independent rect. 3 4
486 96.05 temperature 10.0 270 > th dose independent rect. 7 20
498 96.11 radiation 40.0 10 < th dose dependent rect. 6 14
515 96.14 temperature 25.0 10 > th dose independent rect. 1 8
521 96.15 wind 9.0 270 < th dose dependent rect. 3 4
533 96.17 humidity 50.0 270 > th dose independent rect. 7 20
580 96.30 radiation 30.0 270 < th dose dependent rect. 2 7
603 96.35 radiation 40.0 270 < th dose dependent rect. 2 15
610 96.38 wind 1.0 30 > th dose independent rect. 4 5
635 96.48 atmosphere 1015.0 10 < th dose independent rect. 15 18
642 96.52 humidity 50.0 10 > th dose independent rect. 15 18
647 96.53 precipitation 0.1 270 < th dose independent rect. 7 20
649 96.53 precipitation 0.1 270 < th dose dependent rect. 7 20
651 96.55 wind 1.0 270 > th dose independent rect. 3 3
677 96.59 radiation 40.0 10 < th dose independent rect. 12 21
695 96.65 wind 9.0 270 < th dose independent rect. 5 23
743 96.77 atmosphere 1015.0 30 < th dose independent rect. 9 19
754 96.79 humidity 50.0 270 > th dose dependent rect. 4 1
784 96.84 humidity 90.0 10 < th dose dependent rect. 9 6
846 96.93 radiation 1.0 90 > th dose independent rect. 17 15
866 96.95 humidity 50.0 270 > th dose dependent rect. 18 9
874 96.97 radiation 40.0 10 < th dose dependent rect. 4 16
911 97.03 atmosphere 1005.0 30 > th dose independent rect. 4 5
913 97.04 radiation 1.0 270 > th dose independent rect. 9 1
949 97.10 temperature 15.0 270 > th dose independent rect. 9 1
952 97.10 radiation 40.0 90 < th dose dependent rect. 15 18
953 97.11 humidity 70.0 90 > th dose independent rect. 3 8
993 97.17 humidity 50.0 270 > th dose independent rect. 9 1