Os04g0598000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0598000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.25 | 0.374 | 16 | -0.306 | 1.7 | 1.06 | 0.258 | -8.7 | 0.457 | 22.4 | 26.76 | 4899 | -- | -- |
| 78.7 | 0.413 | 15.8 | 1.21 | 1.84 | 0.507 | 0.321 | -- | 0.534 | 22.1 | 11.15 | 37877 | -- | -- |
| 63.48 | 0.371 | 16 | -0.379 | 1.7 | 1.11 | -- | -9.12 | 0.454 | 22.4 | 27 | 4896 | -- | -- |
| 76.91 | 0.408 | 15.8 | 1.32 | 1.71 | 0.414 | -- | -- | 0.625 | 22.3 | 11.27 | 30701 | -- | -- |
| 226.05 | 0.7 | 16 | -0.516 | -- | 1.53 | -- | -8.6 | 0.242 | -- | 25.29 | 2223 | -- | -- |
| 79.1 | 0.417 | 15.7 | 1.72 | 1.73 | -- | 0.222 | -- | 0.802 | 22.3 | -- | -- | -- | -- |
| 79.3 | 0.417 | 15.7 | 1.71 | 1.73 | -- | -- | -- | 0.802 | 22.3 | -- | -- | -- | -- |
| 242.12 | 0.728 | 15.7 | 1.95 | -- | -1.14 | -- | -- | 0.958 | -- | 11.27 | 30701 | -- | -- |
| 89.67 | 0.441 | 15.9 | -- | 1.71 | 1.32 | -- | -- | 0.218 | 22.2 | 6.867 | 47520 | -- | -- |
| 260.8 | 0.755 | 15.7 | 1.74 | -- | -- | -- | -- | 0.806 | -- | -- | -- | -- | -- |
| 156.57 | 0.585 | 15.8 | -- | 1.74 | -- | -- | -- | 0.611 | 22.4 | -- | -- | -- | -- |
| 266.65 | 0.761 | 15.8 | -- | -- | 1.38 | -- | -- | 0.2 | -- | 5.341 | 47520 | -- | -- |
| 340.52 | 0.861 | 15.7 | -- | -- | -- | -- | -- | 0.613 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.93 | temperature | 20 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 10 | 64.32 | temperature | 20 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 13 | 64.35 | temperature | 20 | 14400 | > th | dose dependent | rect. | 20 | 9 |
| 57 | 64.52 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 66 | 64.55 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 91 | 64.69 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 102 | 64.78 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 114 | 64.91 | temperature | 20 | 14400 | > th | dose dependent | sin | 10 | NA |
| 119 | 64.97 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 141 | 65.15 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 158 | 65.41 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 160 | 65.41 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 162 | 65.42 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 169 | 65.49 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 178 | 65.54 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 179 | 65.54 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 191 | 65.62 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 198 | 65.65 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 202 | 65.66 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 209 | 65.70 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 223 | 65.80 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 257 | 66.02 | radiation | 40 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 307 | 66.22 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 314 | 66.25 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 324 | 66.29 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 342 | 66.35 | radiation | 30 | 43200 | > th | dose independent | rect. | 15 | 21 |
| 353 | 66.38 | radiation | 1 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 362 | 66.41 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 22 |
| 371 | 66.44 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 392 | 66.45 | radiation | 20 | 43200 | > th | dose independent | rect. | 15 | 19 |
| 394 | 66.45 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 424 | 66.48 | radiation | 30 | 43200 | > th | dose independent | sin | 20 | NA |
| 427 | 66.48 | radiation | 30 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 452 | 66.49 | radiation | 30 | 43200 | > th | dose independent | no | NA | NA |
| 658 | 66.58 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 21 |
| 665 | 66.60 | radiation | 20 | 43200 | > th | dose independent | sin | 12 | NA |
| 709 | 66.64 | radiation | 30 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 748 | 66.67 | radiation | 40 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 749 | 66.67 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 812 | 66.69 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 21 |