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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0597800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.74 (0.0516) R2 : 0.346
β1 : 0.962 (0.188) R2dD : 0.0315 R2D : -0.000319
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.19 (0.212) R2dE : 0.344 R2E : 0.271
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.68 (0.112) R2dN8 : 0.0616 R2N8 : -0.0231
σ : 0.959
deviance : 424.41
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.84
memory length : 1576
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11.1
open length of G : 19.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
411.35 0.953 3.77 0.613 1.14 3.25 0.643 3.75 0.51 0.98 0.9935 1442 11 19.1
422.28 0.957 3.77 1.11 1.15 2.78 0.744 -- 0.548 0.798 1.153 1439 11 19.2
412.45 0.946 3.77 0.603 1.13 3.21 -- 3.8 0.512 1.16 0.9998 1445 11 19.1
422.74 0.958 3.77 1.08 1.09 2.89 -- -- 0.555 0.915 1.226 1452 11 19.2
416.12 0.95 3.76 0.672 -- 3.71 -- 3.54 0.558 -- 1.099 1537 10.9 19.3
551.27 1.1 3.8 0.636 1.15 -- 0.369 -- 0.268 0.807 -- -- -- --
551.79 1.1 3.8 0.622 1.15 -- -- -- 0.266 0.915 -- -- -- --
424.41 0.959 3.74 0.962 -- 3.19 -- -- 0.68 -- 1.84 1576 11.1 19.4
436.2 0.973 3.76 -- 1.11 2.62 -- -- 0.561 0.792 2.29 1452 11 19.2
633.87 1.18 3.78 0.664 -- -- -- -- 0.287 -- -- -- -- --
561.98 1.11 3.81 -- 1.16 -- -- -- 0.196 0.939 -- -- -- --
438.6 0.975 3.73 -- -- 3.34 -- -- 0.7 -- 2.38 1585 11 19.5
645.51 1.19 3.8 -- -- -- -- -- 0.214 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 411.69 radiation 1 1440 < th dose independent rect. 11 19
6 413.61 radiation 1 1440 > th dose independent rect. 11 19
14 416.77 radiation 1 1440 < th dose dependent rect. 9 21
37 421.52 temperature 30 14400 < th dose independent rect. 13 19
38 421.53 temperature 30 14400 < th dose independent rect. 13 6
43 421.54 temperature 30 14400 < th dose independent rect. 13 11
44 421.54 temperature 30 14400 < th dose independent rect. 13 16
47 421.57 temperature 30 14400 < th dose independent rect. 13 14
51 421.76 temperature 30 14400 > th dose independent rect. 13 6
65 421.77 temperature 30 14400 < th dose independent sin 15 NA
87 421.96 temperature 30 14400 > th dose independent sin 15 NA
232 422.61 temperature 30 14400 < th dose independent rect. 16 1
238 422.71 temperature 30 14400 > th dose independent rect. 16 1
242 422.79 radiation 1 1440 < th dose dependent rect. 9 12
265 422.88 temperature 30 14400 < th dose independent rect. 13 2
267 422.89 radiation 1 1440 < th dose dependent rect. 9 15
268 422.90 wind 5 43200 < th dose independent rect. 11 1
269 422.94 temperature 30 14400 > th dose independent rect. 13 2
272 422.95 radiation 1 1440 < th dose dependent rect. 9 10
288 422.99 temperature 30 14400 > th dose dependent rect. 14 1
297 423.03 radiation 1 1440 < th dose dependent rect. 11 10
321 423.18 temperature 30 14400 < th dose independent rect. 18 23
322 423.18 radiation 1 1440 < th dose dependent rect. 11 8
331 423.22 temperature 30 14400 < th dose independent rect. 2 17
339 423.23 temperature 30 14400 < th dose independent rect. 2 22
341 423.24 temperature 30 14400 < th dose independent rect. 4 15
350 423.25 temperature 30 14400 < th dose independent rect. 6 13
358 423.25 temperature 30 14400 < th dose independent rect. 23 20
379 423.26 temperature 30 14400 < th dose independent rect. 6 23
388 423.27 temperature 30 14400 < th dose independent no NA NA
495 423.58 wind 5 43200 > th dose independent rect. 11 1
503 423.66 temperature 30 14400 > th dose independent rect. 18 23
506 423.70 temperature 30 14400 > th dose independent no NA NA
658 424.02 temperature 25 14400 > th dose dependent rect. 18 1
665 424.21 radiation 1 720 < th dose dependent rect. 5 22
668 424.22 temperature 25 14400 > th dose dependent rect. 17 3
671 424.24 temperature 25 14400 > th dose dependent rect. 17 6
722 424.55 radiation 1 1440 < th dose dependent sin 22 NA
742 424.97 temperature 30 14400 > th dose dependent rect. 14 5
757 424.99 radiation 1 1440 < th dose independent sin 15 NA
767 425.18 radiation 1 1440 < th dose independent rect. 11 10
789 425.22 radiation 1 1440 < th dose independent rect. 11 13
797 425.27 radiation 1 1440 < th dose independent rect. 11 8
844 425.62 temperature 25 14400 > th dose dependent sin 13 NA
862 425.76 radiation 1 1440 > th dose independent rect. 11 8
968 426.11 radiation 1 1440 > th dose independent sin 15 NA