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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0597700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0214) R2 : 0.000159
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0121 (0.045) R2dN8 : 0.000206 R2N8 : 0.000159
σ : 0.402
deviance : 74.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.77 0.387 3.21 0.278 0.134 4.1 -0.00218 14.2 0.0179 7.35 995 5605 -- --
72.37 0.399 3.17 0.133 0.143 0.517 0.0441 -- 0.00297 7.4 995 5605 -- --
67.74 0.383 3.21 0.289 0.139 4.41 -- 15.2 0.0151 7.58 995 6089 -- --
70.41 0.391 3.17 0.114 0.132 0.451 -- -- 0.0279 7.43 998.3 5986 -- --
68.56 0.386 3.25 0.423 -- 8.16 -- 28 0.0106 -- 994.9 5588 -- --
72.7 0.4 3.17 0.138 0.137 -- 0.0348 -- 0.0014 7.5 -- -- -- --
72.7 0.399 3.17 0.138 0.137 -- -- -- 0.00126 7.39 -- -- -- --
71.35 0.393 3.17 0.124 -- 0.473 -- -- 0.0289 -- 998.3 5984 -- --
70.79 0.392 3.17 -- 0.136 0.443 -- -- 0.0153 7.22 998.6 6194 -- --
73.7 0.401 3.18 0.141 -- -- -- -- 0.0035 -- -- -- -- --
73.21 0.4 3.18 -- 0.138 -- -- -- -0.0142 7.32 -- -- -- --
71.75 0.395 3.17 -- -- 0.468 -- -- 0.0205 -- 998.4 6002 -- --
74.22 0.402 3.18 -- -- -- -- -- -0.0121 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 59.41 wind 3.0 10 < th dose dependent rect. 2 1
2 59.44 wind 1.0 10 < th dose independent rect. 2 1
4 59.46 atmosphere 1015.0 30 < th dose dependent rect. 2 1
13 59.55 temperature 30.0 30 < th dose dependent rect. 2 1
14 59.56 temperature 25.0 30 < th dose independent rect. 2 1
17 59.56 atmosphere 1005.0 10 > th dose dependent rect. 2 1
22 59.58 temperature 10.0 30 > th dose independent rect. 2 1
25 59.58 humidity 50.0 30 > th dose independent rect. 2 1
28 59.58 atmosphere 995.0 30 > th dose independent rect. 2 1
29 59.58 atmosphere 1010.0 30 < th dose independent rect. 2 1
31 59.58 radiation 1.0 30 < th dose independent rect. 2 1
36 59.58 precipitation 0.1 30 < th dose independent rect. 2 1
37 59.58 temperature 10.0 30 > th dose independent rect. 3 23
38 59.58 radiation 1.0 30 < th dose dependent rect. 2 1
43 59.58 precipitation 0.1 30 < th dose dependent rect. 2 1
46 59.59 humidity 50.0 30 > th dose dependent rect. 2 1
49 59.61 temperature 10.0 30 > th dose dependent rect. 2 1
76 59.68 atmosphere 995.0 30 > th dose dependent rect. 2 1
89 59.74 atmosphere 1005.0 30 > th dose independent rect. 2 1
98 59.85 wind 9.0 30 < th dose independent rect. 3 23
100 59.88 wind 1.0 30 > th dose independent rect. 2 1
107 60.51 atmosphere 1000.0 30 > th dose independent rect. 3 23
115 61.63 precipitation 0.1 30 < th dose independent rect. 3 23
116 61.63 precipitation 0.1 30 < th dose dependent rect. 3 23
129 62.61 radiation 1.0 43200 < th dose dependent rect. 3 1
140 63.01 wind 9.0 1440 < th dose independent rect. 3 1
141 63.01 temperature 10.0 1440 > th dose independent rect. 3 1
144 63.01 temperature 30.0 1440 < th dose independent rect. 3 1
148 63.01 humidity 50.0 1440 > th dose independent rect. 3 1
157 63.01 atmosphere 995.0 1440 > th dose independent rect. 3 1
158 63.01 radiation 1.0 1440 < th dose independent rect. 3 1
178 63.01 temperature 10.0 1440 > th dose independent rect. 4 23
200 63.74 humidity 50.0 30 > th dose independent rect. 3 23
220 64.56 precipitation 0.1 4320 > th dose dependent rect. 20 1
251 64.86 atmosphere 995.0 4320 > th dose independent rect. 4 10
258 65.00 humidity 90.0 90 < th dose independent rect. 2 1
260 65.16 atmosphere 995.0 4320 > th dose independent rect. 14 1
262 65.17 atmosphere 995.0 4320 < th dose dependent rect. 14 1
282 65.24 atmosphere 995.0 4320 > th dose independent rect. 11 2
284 65.25 atmosphere 995.0 4320 < th dose independent rect. 14 1
295 65.28 atmosphere 995.0 4320 > th dose independent rect. 12 5
343 65.70 atmosphere 995.0 4320 > th dose independent rect. 8 9
349 65.76 atmosphere 1015.0 30 < th dose independent rect. 3 23
352 65.81 atmosphere 995.0 4320 > th dose independent rect. 9 4
450 66.14 atmosphere 995.0 4320 > th dose independent rect. 12 9
453 66.19 radiation 1.0 4320 < th dose dependent rect. 23 1
471 66.36 atmosphere 995.0 4320 > th dose independent rect. 24 13
499 66.56 temperature 25.0 270 > th dose independent rect. 23 4
511 66.64 atmosphere 995.0 4320 > th dose independent rect. 8 13
515 66.65 wind 1.0 10 < th dose independent rect. 15 12
551 66.68 wind 1.0 10 < th dose independent rect. 17 10
553 66.68 radiation 1.0 4320 < th dose dependent rect. 19 8
558 66.70 wind 1.0 10 < th dose independent rect. 21 6
573 66.77 radiation 1.0 4320 < th dose dependent rect. 23 3
603 66.98 radiation 1.0 4320 < th dose dependent rect. 22 5
608 67.02 precipitation 0.1 4320 > th dose independent rect. 20 1
620 67.05 wind 1.0 30 > th dose dependent rect. 2 1
623 67.06 precipitation 0.1 4320 < th dose independent rect. 20 1
625 67.06 precipitation 0.1 4320 < th dose dependent rect. 20 1
642 67.20 atmosphere 995.0 4320 > th dose independent rect. 19 18
654 67.31 atmosphere 995.0 30 > th dose dependent rect. 3 23
658 67.33 temperature 25.0 270 > th dose dependent rect. 23 4
673 67.42 atmosphere 1015.0 1440 < th dose independent rect. 3 1
693 67.51 wind 1.0 10 < th dose independent rect. 8 19
718 67.65 humidity 90.0 720 > th dose independent rect. 3 1
765 67.81 temperature 10.0 720 > th dose independent rect. 15 8
768 67.81 temperature 10.0 720 > th dose independent rect. 23 16
775 67.84 temperature 30.0 30 < th dose independent rect. 3 23
786 67.88 temperature 10.0 720 > th dose independent rect. 3 8
787 67.88 atmosphere 995.0 720 > th dose independent rect. 3 8
788 67.88 temperature 10.0 720 > th dose independent rect. 11 16
800 67.91 wind 9.0 30 < th dose dependent rect. 3 23
801 67.92 atmosphere 1000.0 90 > th dose independent rect. 3 10
811 67.97 wind 7.0 4320 > th dose independent rect. 6 1
816 67.97 temperature 10.0 30 > th dose dependent rect. 3 23
818 67.99 wind 7.0 4320 > th dose dependent rect. 6 1
820 68.00 wind 9.0 720 < th dose independent rect. 3 8
825 68.01 radiation 20.0 30 < th dose dependent rect. 3 23
829 68.02 atmosphere 995.0 720 > th dose independent rect. 23 16
834 68.04 atmosphere 1000.0 90 > th dose independent rect. 3 12
841 68.07 radiation 10.0 30 < th dose independent rect. 3 23
848 68.11 precipitation 0.1 720 < th dose independent rect. 15 8
852 68.11 precipitation 0.1 720 < th dose dependent rect. 15 8
860 68.14 wind 3.0 30 < th dose dependent rect. 22 5
864 68.18 radiation 40.0 720 < th dose independent rect. 15 8
895 68.23 atmosphere 1015.0 720 < th dose independent rect. 3 8
952 68.35 humidity 90.0 720 < th dose independent rect. 2 2
960 68.40 humidity 50.0 720 > th dose independent rect. 3 8
965 68.43 wind 1.0 10 > th dose independent sin 15 NA
973 68.46 atmosphere 1000.0 10 > th dose independent rect. 2 12
978 68.48 humidity 90.0 720 < th dose independent rect. 24 5
981 68.48 precipitation 0.1 720 < th dose independent rect. 11 16
984 68.48 precipitation 0.1 720 < th dose dependent rect. 11 16