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Os04g0597400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.56 (0.0245) R2 : 0.786
β1 : 3.61 (0.0915) R2dD : 0.809 R2D : 0.486
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.36 (0.105) R2dE : 0.0927 R2E : -0.149
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.1 (0.0547) R2dN8 : 0.287 R2N8 : -0.0182
σ : 0.455
deviance : 94.81
__
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C
peak time of C : --
E
wheather : temperature
threshold : 31.1
memory length : 18
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.53 0.445 9.56 3.55 0.239 1.65 1.09 0.699 1.12 14.4 31.26 19 -- --
89.93 0.442 9.55 3.67 0.228 1.65 0.898 -- 1.14 14.5 31.4 18 -- --
92.79 0.452 9.54 3.71 0.215 1.59 -- -0.296 1.16 13.9 31.26 19 -- --
92.65 0.448 9.55 3.68 0.22 1.6 -- -- 1.15 14.2 31.1 18 -- --
94.57 0.453 9.55 3.68 -- 1.53 -- -0.511 1.11 -- 33.6 18 -- --
123.41 0.521 9.61 3.29 0.305 -- -0.622 -- 0.863 2.43 -- -- -- --
124.81 0.523 9.61 3.31 0.304 -- -- -- 0.867 2.46 -- -- -- --
94.81 0.455 9.56 3.61 -- 1.36 -- -- 1.1 -- 31.1 18 -- --
413.35 0.952 9.69 -- 0.353 0.0538 -- -- 0.505 2.62 35.56 88 -- --
130.26 0.533 9.61 3.32 -- -- -- -- 0.874 -- -- -- -- --
413.39 0.951 9.69 -- 0.368 -- -- -- 0.498 2.6 -- -- -- --
418.4 0.956 9.68 -- -- 0.442 -- -- 0.555 -- 60.55 6 -- --
421.33 0.958 9.69 -- -- -- -- -- 0.506 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 82.19 wind 9.0 43200 > th dose dependent rect. 18 13
8 83.59 wind 9.0 43200 > th dose independent rect. 18 13
10 83.93 wind 9.0 43200 > th dose independent rect. 18 11
11 83.99 wind 9.0 43200 > th dose dependent rect. 18 6
21 84.14 wind 9.0 43200 > th dose independent rect. 18 6
26 84.65 wind 9.0 43200 < th dose independent rect. 18 6
28 84.80 wind 9.0 43200 < th dose independent rect. 18 13
29 84.82 wind 9.0 43200 < th dose independent rect. 18 10
42 85.79 wind 7.0 43200 > th dose independent rect. 20 1
43 85.93 wind 7.0 43200 > th dose dependent rect. 20 1
44 85.98 wind 7.0 43200 < th dose independent rect. 20 1
45 85.98 wind 9.0 43200 > th dose dependent rect. 18 4
48 86.27 wind 9.0 43200 > th dose dependent rect. 20 4
50 86.31 wind 9.0 43200 < th dose independent rect. 18 4
57 86.53 wind 9.0 43200 > th dose independent rect. 18 4
66 86.80 wind 9.0 43200 > th dose dependent rect. 20 11
95 87.91 wind 9.0 43200 > th dose dependent sin 12 NA
99 88.00 wind 9.0 43200 > th dose independent rect. 20 5
100 88.01 temperature 30.0 90 < th dose dependent rect. 11 23
101 88.05 temperature 30.0 270 < th dose dependent rect. 9 22
122 88.75 wind 9.0 43200 < th dose independent rect. 20 5
130 88.97 temperature 30.0 30 < th dose dependent rect. 9 23
135 89.10 wind 9.0 43200 > th dose independent sin 11 NA
139 89.15 wind 9.0 43200 < th dose independent rect. 20 7
141 89.16 wind 9.0 43200 > th dose independent rect. 20 11
148 89.32 temperature 30.0 10 < th dose dependent rect. 13 23
166 89.64 radiation 1.0 43200 < th dose dependent rect. 20 7
174 89.73 atmosphere 995.0 43200 > th dose independent rect. 12 1
175 89.74 wind 9.0 43200 < th dose independent rect. 20 11
182 89.91 temperature 30.0 10 < th dose dependent no NA NA
184 89.93 temperature 15.0 10 > th dose dependent no NA NA
201 90.18 radiation 1.0 43200 < th dose dependent rect. 20 5
203 90.21 temperature 30.0 10 < th dose dependent rect. 15 23
208 90.27 radiation 20.0 4320 < th dose independent rect. 15 16
209 90.28 wind 9.0 43200 < th dose independent sin 11 NA
214 90.35 temperature 30.0 10 < th dose dependent rect. 17 23
217 90.39 temperature 30.0 1440 < th dose dependent rect. 18 1
227 90.55 temperature 30.0 10 < th dose dependent rect. 19 23
237 90.74 atmosphere 995.0 43200 < th dose dependent rect. 14 2
244 90.84 atmosphere 995.0 43200 < th dose independent rect. 14 1
248 90.86 temperature 30.0 1440 < th dose dependent rect. 17 5
250 90.88 radiation 20.0 4320 < th dose independent rect. 15 4
263 90.90 temperature 20.0 720 > th dose dependent rect. 12 23
265 90.92 temperature 20.0 90 > th dose dependent rect. 6 23
267 90.93 radiation 20.0 4320 < th dose independent rect. 15 11
272 90.95 precipitation 0.1 43200 > th dose dependent rect. 17 1
275 90.99 temperature 10.0 720 > th dose dependent rect. 13 22
277 91.01 temperature 20.0 1440 > th dose dependent rect. 20 1
283 91.09 temperature 20.0 1440 > th dose dependent rect. 18 3
286 91.12 atmosphere 1000.0 43200 < th dose dependent rect. 11 1
309 91.33 temperature 20.0 720 > th dose dependent rect. 7 22
310 91.35 temperature 10.0 1440 > th dose dependent rect. 20 1
313 91.36 wind 7.0 43200 > th dose independent rect. 6 1
317 91.37 temperature 30.0 30 < th dose dependent rect. 5 23
318 91.38 temperature 20.0 1440 > th dose dependent rect. 18 1
324 91.40 temperature 15.0 270 > th dose dependent rect. 15 23
327 91.41 temperature 20.0 10 > th dose dependent rect. 7 23
338 91.45 wind 1.0 43200 < th dose dependent rect. 20 1
351 91.48 atmosphere 995.0 43200 > th dose independent rect. 8 7
354 91.48 temperature 30.0 1440 < th dose dependent rect. 20 1
356 91.49 temperature 20.0 720 > th dose dependent rect. 10 23
406 91.63 temperature 15.0 270 > th dose dependent rect. 4 23
413 91.64 temperature 20.0 720 > th dose dependent rect. 21 23
419 91.65 temperature 30.0 720 < th dose dependent rect. 3 20
425 91.67 wind 9.0 43200 > th dose dependent rect. 14 18
435 91.70 temperature 20.0 720 > th dose dependent no NA NA
446 91.73 temperature 20.0 720 > th dose dependent rect. 23 23
450 91.74 temperature 30.0 10 < th dose dependent rect. 23 23
456 91.75 temperature 30.0 10 < th dose dependent rect. 21 23
502 91.87 temperature 20.0 720 > th dose dependent rect. 1 23
519 91.92 temperature 20.0 1440 > th dose dependent rect. 17 18
539 91.94 temperature 30.0 10 < th dose dependent rect. 1 23
607 92.05 temperature 30.0 1440 < th dose dependent rect. 17 18
642 92.12 temperature 10.0 720 > th dose dependent rect. 21 23
643 92.12 temperature 30.0 10 < th dose dependent rect. 3 23
701 92.20 temperature 20.0 10 > th dose dependent rect. 1 23
715 92.22 temperature 20.0 90 > th dose dependent rect. 1 23
720 92.24 temperature 15.0 1440 > th dose dependent sin 14 NA
810 92.38 atmosphere 1000.0 43200 < th dose independent rect. 11 1
881 92.47 temperature 20.0 30 > th dose dependent rect. 21 23
904 92.50 temperature 20.0 10 > th dose dependent rect. 3 23
953 92.55 precipitation 0.1 43200 > th dose independent rect. 17 1
976 92.57 temperature 30.0 1440 < th dose dependent sin 14 NA