Os04g0597300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WERKY protein (Fragment).
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Os04g0597300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WERKY protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.5 | 0.487 | 2.98 | 0.194 | 0.108 | 0.782 | 0.25 | 0.698 | 0.0555 | 7.18 | 1015 | 4270 | -- | -- |
| 107.82 | 0.484 | 2.97 | 0.204 | 0.112 | 0.55 | 0.25 | -- | 0.0686 | 7.25 | 1014 | 4283 | -- | -- |
| 107.66 | 0.483 | 2.98 | 0.207 | 0.104 | 0.824 | -- | 0.768 | 0.055 | 7.23 | 1015 | 4313 | -- | -- |
| 107.92 | 0.484 | 2.97 | 0.221 | 0.107 | 0.539 | -- | -- | 0.064 | 7.31 | 1014 | 4319 | -- | -- |
| 108.25 | 0.485 | 2.99 | 0.206 | -- | 0.907 | -- | 0.966 | 0.0497 | -- | 1015 | 4316 | -- | -- |
| 113.16 | 0.499 | 2.99 | 0.164 | 0.0901 | -- | 0.238 | -- | 0.00438 | 7.11 | -- | -- | -- | -- |
| 113.3 | 0.498 | 2.99 | 0.17 | 0.091 | -- | -- | -- | 0.00417 | 7.75 | -- | -- | -- | -- |
| 108.53 | 0.485 | 2.98 | 0.222 | -- | 0.53 | -- | -- | 0.0647 | -- | 1014 | 4320 | -- | -- |
| 109.18 | 0.487 | 2.98 | -- | 0.108 | 0.517 | -- | -- | 0.0371 | 7.23 | 1014 | 4279 | -- | -- |
| 113.75 | 0.498 | 2.99 | 0.171 | -- | -- | -- | -- | 0.00547 | -- | -- | -- | -- | -- |
| 114.06 | 0.5 | 2.99 | -- | 0.0924 | -- | -- | -- | -0.0147 | 7.63 | -- | -- | -- | -- |
| 109.8 | 0.488 | 2.98 | -- | -- | 0.506 | -- | -- | 0.0364 | -- | 1014 | 4275 | -- | -- |
| 114.52 | 0.499 | 2.99 | -- | -- | -- | -- | -- | -0.0135 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.96 | wind | 3.0 | 10 | > th | dose dependent | rect. | 1 | 5 |
| 2 | 103.01 | wind | 7.0 | 90 | > th | dose independent | rect. | 24 | 8 |
| 4 | 103.02 | wind | 7.0 | 90 | > th | dose independent | rect. | 24 | 5 |
| 12 | 103.03 | wind | 7.0 | 90 | > th | dose dependent | rect. | 24 | 4 |
| 25 | 103.06 | wind | 5.0 | 90 | > th | dose independent | rect. | 1 | 1 |
| 29 | 103.06 | wind | 5.0 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 37 | 103.08 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 22 | 1 |
| 39 | 103.08 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 22 | 1 |
| 48 | 103.19 | wind | 3.0 | 10 | > th | dose dependent | rect. | 1 | 1 |
| 81 | 104.02 | wind | 3.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 116 | 105.01 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 120 | 105.05 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 124 | 105.09 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 132 | 105.09 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 229 | 105.97 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 1 | 2 |
| 303 | 106.70 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 312 | 106.72 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 16 |
| 320 | 106.78 | atmosphere | 1015.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 352 | 106.86 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 430 | 107.15 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 6 | 14 |
| 435 | 107.18 | atmosphere | 1015.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 437 | 107.18 | radiation | 1.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 457 | 107.22 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 7 | 9 |
| 458 | 107.22 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 6 | 11 |
| 490 | 107.27 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 9 | 4 |
| 522 | 107.32 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 23 | NA |
| 558 | 107.37 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 5 | 10 |
| 756 | 107.51 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 18 | 22 |
| 792 | 107.53 | atmosphere | 1015.0 | 4320 | > th | dose dependent | no | NA | NA |
| 804 | 107.53 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 829 | 107.55 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 830 | 107.55 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 839 | 107.56 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 12 | 14 |
| 852 | 107.56 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 9 | 23 |
| 883 | 107.58 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 4 | 15 |
| 900 | 107.59 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 12 | 17 |
| 938 | 107.61 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 12 | 21 |