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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0595700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phosphoribulokinase/uridine kinase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.84 (0.0343) R2 : 0.43
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.39 (0.0888) R2dC : 0.308 R2C : 0.26
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.737 (0.0721) R2dN8 : 0.169 R2N8 : 0.122
σ : 0.646
deviance : 190.61
__
_____
C
peak time of C : 7.26
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
164.12 0.602 4.86 0.665 1.38 2.83 1.35 3.27 -0.491 7.36 20.2 6175 -- --
167.7 0.603 4.78 0.718 1.32 1.5 1.59 -- -0.375 7.23 22.2 6123 -- --
168.71 0.605 4.86 0.687 1.4 2.91 -- 3.38 -0.496 7.24 19.9 6075 -- --
171.19 0.609 4.77 0.764 1.37 1.55 -- -- -0.417 7.23 21.46 6058 -- --
269.95 0.765 4.91 0.73 -- 3.12 -- 3.84 -0.474 -- 19.96 6326 -- --
185.54 0.639 4.84 -0.0562 1.38 -- 1.38 -- -0.737 7.4 -- -- -- --
190.59 0.647 4.84 -0.027 1.39 -- -- -- -0.74 7.26 -- -- -- --
272.42 0.769 4.8 0.745 -- 1.47 -- -- -0.427 -- 21.72 6329 -- --
177.8 0.621 4.81 -- 1.39 0.804 -- -- -0.601 7.19 22.8 3300 -- --
292.85 0.8 4.87 -0.00256 -- -- -- -- -0.717 -- -- -- -- --
190.61 0.646 4.84 -- 1.39 -- -- -- -0.737 7.26 -- -- -- --
273.31 0.77 4.82 -- -- 0.974 -- -- -0.516 -- 26 2065 -- --
292.85 0.799 4.87 -- -- -- -- -- -0.716 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 154.35 wind 9.0 14400 < th dose independent rect. 6 6
5 154.92 wind 9.0 14400 < th dose independent rect. 9 3
7 155.54 wind 9.0 14400 > th dose dependent rect. 10 2
11 155.88 wind 9.0 14400 > th dose independent rect. 6 6
13 155.98 wind 9.0 14400 > th dose dependent rect. 6 6
17 156.24 wind 9.0 14400 > th dose independent rect. 9 3
24 156.46 wind 1.0 43200 > th dose dependent rect. 1 1
25 156.49 wind 9.0 14400 > th dose dependent rect. 5 8
36 157.18 wind 7.0 14400 > th dose independent rect. 11 2
37 157.25 temperature 25.0 90 < th dose dependent rect. 24 11
43 157.68 temperature 30.0 90 < th dose dependent sin 6 NA
48 157.91 temperature 30.0 10 < th dose dependent sin 5 NA
54 158.07 temperature 15.0 10 > th dose dependent sin 5 NA
57 158.17 temperature 15.0 90 > th dose dependent sin 6 NA
59 158.23 temperature 15.0 270 > th dose dependent rect. 20 14
63 158.29 wind 3.0 43200 < th dose dependent rect. 5 1
65 158.34 precipitation 0.1 14400 > th dose independent rect. 7 1
66 158.34 precipitation 0.1 14400 > th dose dependent rect. 7 1
73 158.44 precipitation 0.1 14400 < th dose independent rect. 7 1
74 158.44 precipitation 0.1 14400 < th dose dependent rect. 7 1
75 158.46 wind 1.0 43200 > th dose dependent rect. 5 1
80 158.61 wind 9.0 43200 < th dose dependent rect. 1 1
85 158.71 wind 9.0 43200 < th dose dependent rect. 5 1
87 158.79 precipitation 0.1 14400 < th dose independent rect. 5 3
88 158.79 precipitation 0.1 14400 < th dose dependent rect. 5 3
94 158.91 precipitation 0.1 14400 > th dose independent rect. 5 3
103 159.12 humidity 60.0 43200 < th dose dependent rect. 8 1
104 159.13 precipitation 0.1 14400 > th dose dependent rect. 5 3
109 159.22 wind 9.0 14400 > th dose independent rect. 24 13
112 159.23 precipitation 0.1 43200 > th dose dependent rect. 18 2
137 159.66 wind 9.0 43200 < th dose dependent rect. 11 2
140 159.69 wind 1.0 43200 > th dose dependent rect. 11 2
148 159.78 wind 3.0 43200 > th dose independent rect. 1 1
150 159.78 humidity 90.0 14400 < th dose dependent rect. 3 1
162 159.98 humidity 60.0 43200 < th dose dependent rect. 4 5
164 160.00 wind 3.0 43200 < th dose dependent rect. 21 9
166 160.02 precipitation 0.1 14400 < th dose independent rect. 4 6
167 160.02 precipitation 0.1 14400 < th dose dependent rect. 4 6
170 160.04 humidity 60.0 43200 < th dose dependent rect. 2 7
177 160.09 precipitation 0.1 14400 > th dose independent rect. 4 6
183 160.15 radiation 20.0 43200 < th dose dependent rect. 12 1
188 160.20 wind 3.0 43200 < th dose independent rect. 1 1
198 160.26 wind 9.0 14400 > th dose dependent rect. 24 13
199 160.27 temperature 20.0 14400 < th dose independent rect. 20 1
216 160.41 precipitation 0.1 14400 > th dose dependent rect. 4 6
232 160.58 temperature 10.0 30 > th dose dependent rect. 6 21
246 160.72 temperature 30.0 10 < th dose dependent rect. 1 11
249 160.77 humidity 80.0 43200 < th dose independent rect. 6 1
250 160.77 radiation 40.0 43200 > th dose independent rect. 11 1
259 160.89 humidity 50.0 43200 < th dose dependent rect. 11 1
269 160.94 humidity 50.0 43200 < th dose dependent rect. 4 8
277 160.95 humidity 50.0 43200 < th dose dependent rect. 7 5
288 160.99 radiation 20.0 43200 > th dose independent rect. 9 1
293 161.00 humidity 60.0 43200 < th dose dependent rect. 13 1
295 161.02 temperature 20.0 14400 > th dose independent rect. 18 1
317 161.09 humidity 80.0 14400 > th dose dependent rect. 12 2
321 161.11 humidity 80.0 43200 > th dose independent rect. 6 1
323 161.13 humidity 60.0 43200 < th dose dependent rect. 2 13
327 161.14 humidity 50.0 43200 > th dose independent rect. 13 1
334 161.16 radiation 30.0 43200 < th dose independent rect. 11 1
354 161.22 humidity 50.0 43200 > th dose independent rect. 13 3
365 161.28 humidity 50.0 43200 > th dose independent rect. 6 10
372 161.29 humidity 50.0 43200 > th dose independent rect. 24 16
378 161.30 wind 3.0 43200 < th dose independent rect. 5 8
397 161.32 temperature 25.0 90 < th dose dependent rect. 24 23
409 161.36 temperature 25.0 90 < th dose dependent rect. 24 21
410 161.37 wind 3.0 43200 > th dose independent rect. 11 1
420 161.41 humidity 70.0 43200 > th dose independent rect. 4 13
422 161.41 wind 9.0 14400 < th dose dependent rect. 23 14
431 161.43 wind 1.0 14400 > th dose independent rect. 21 5
441 161.44 wind 3.0 43200 < th dose independent rect. 11 1
462 161.46 precipitation 0.1 43200 < th dose independent rect. 18 2
464 161.46 precipitation 0.1 43200 < th dose dependent rect. 18 2
469 161.47 wind 3.0 14400 < th dose dependent rect. 21 5
474 161.48 wind 9.0 43200 < th dose dependent rect. 4 10
476 161.49 precipitation 0.1 43200 > th dose independent rect. 18 2
479 161.49 radiation 20.0 43200 > th dose dependent rect. 11 1
484 161.50 humidity 60.0 43200 < th dose independent rect. 8 1
486 161.51 humidity 50.0 43200 > th dose independent sin 4 NA
487 161.51 wind 1.0 14400 < th dose independent rect. 21 5
501 161.53 humidity 50.0 43200 < th dose independent rect. 11 1
511 161.54 wind 1.0 14400 > th dose dependent rect. 22 15
519 161.56 precipitation 0.1 14400 > th dose independent rect. 9 1
525 161.56 humidity 50.0 43200 < th dose dependent sin 9 NA
526 161.56 precipitation 0.1 14400 > th dose dependent rect. 9 1
539 161.58 radiation 10.0 4320 < th dose independent rect. 18 2
541 161.58 wind 1.0 43200 < th dose dependent rect. 11 1
543 161.60 humidity 50.0 43200 < th dose independent rect. 6 7
544 161.60 humidity 60.0 43200 < th dose dependent sin 5 NA
552 161.61 wind 3.0 43200 > th dose independent rect. 5 8
557 161.62 wind 1.0 14400 > th dose independent rect. 21 8
565 161.63 radiation 10.0 43200 < th dose independent rect. 12 1
580 161.64 wind 9.0 14400 < th dose dependent rect. 1 12
588 161.65 wind 3.0 14400 < th dose dependent rect. 21 16
599 161.67 humidity 50.0 43200 > th dose independent rect. 12 21
634 161.72 wind 9.0 14400 < th dose dependent rect. 22 9
640 161.73 radiation 10.0 4320 < th dose independent rect. 18 6
654 161.75 wind 1.0 14400 < th dose independent rect. 19 7
669 161.76 precipitation 0.1 14400 < th dose independent rect. 9 1
676 161.76 precipitation 0.1 14400 < th dose dependent rect. 9 1
691 161.77 wind 1.0 14400 > th dose dependent rect. 4 9
735 161.81 wind 1.0 14400 > th dose dependent rect. 1 12
743 161.83 humidity 50.0 43200 < th dose independent sin 4 NA
754 161.84 wind 1.0 14400 > th dose independent rect. 19 10
775 161.86 humidity 70.0 43200 < th dose independent rect. 4 12
875 161.93 humidity 50.0 43200 > th dose independent no NA NA
880 161.93 humidity 50.0 43200 > th dose independent rect. 4 21
905 161.94 wind 1.0 14400 > th dose dependent rect. 22 9
952 161.98 temperature 20.0 14400 < th dose independent rect. 18 7
965 161.99 temperature 20.0 14400 > th dose independent rect. 18 4
968 161.99 wind 1.0 14400 > th dose independent rect. 19 12
980 162.00 temperature 20.0 14400 > th dose independent rect. 20 1
984 162.00 precipitation 0.1 14400 < th dose independent rect. 4 9