FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0595000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase A1, pepsin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.37 (0.0263) R2 : 0.00865
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.111 (0.0554) R2dN8 : 0.0112 R2N8 : 0.00865
σ : 0.496
deviance : 112.85
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
76.83 0.412 3.37 -0.216 0.152 0.215 -0.0169 -18.5 -0.0097 7.8 20.48 34 2.11 0.829
89.72 0.441 3.39 0.0881 0.154 1.67 -0.0517 -- 0.0062 8.38 17.07 78 2.21 0.384
76.83 0.408 3.37 -0.217 0.152 0.214 -- -18.5 -0.00971 7.79 20.45 33 2.12 0.83
89.69 0.441 3.39 0.0745 0.149 1.69 -- -- -0.011 7.91 18.45 77 2.22 0.397
78.07 0.414 3.37 -0.215 -- 0.234 -- -18.5 -0.00908 -- 20.18 33 2.19 0.81
110.1 0.492 3.36 0.076 0.22 -- -0.191 -- 0.114 5.78 -- -- -- --
110.19 0.492 3.36 0.0749 0.219 -- -- -- 0.115 5.83 -- -- -- --
90.88 0.444 3.4 0.077 -- 1.71 -- -- -0.01 -- 18.57 76 2.23 0.4
89.83 0.441 3.4 -- 0.149 1.69 -- -- -0.0195 7.87 18.51 75 2.22 0.423
112.67 0.496 3.37 0.0816 -- -- -- -- 0.12 -- -- -- -- --
110.34 0.491 3.37 -- 0.22 -- -- -- 0.106 5.82 -- -- -- --
91.04 0.444 3.4 -- -- 1.71 -- -- -0.0186 -- 18.63 73 2.25 0.441
112.85 0.496 3.37 -- -- -- -- -- 0.111 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.50 temperature 20.0 30 > th dose dependent rect. 2 1
2 77.69 temperature 20.0 30 > th dose independent rect. 2 1
3 77.94 radiation 1.0 43200 < th dose dependent rect. 3 1
5 78.42 atmosphere 1005.0 30 > th dose dependent rect. 2 1
8 78.58 atmosphere 1005.0 30 > th dose independent rect. 2 1
11 78.77 wind 3.0 30 < th dose independent rect. 2 1
14 78.90 wind 7.0 30 < th dose dependent rect. 2 1
17 78.94 humidity 80.0 30 > th dose independent rect. 2 1
18 78.95 temperature 25.0 30 < th dose independent rect. 2 1
20 78.98 temperature 10.0 30 > th dose independent rect. 2 1
23 78.98 humidity 50.0 30 > th dose independent rect. 2 1
27 78.98 atmosphere 1010.0 30 < th dose independent rect. 2 1
29 78.98 radiation 1.0 30 < th dose independent rect. 2 1
34 78.98 precipitation 0.1 30 < th dose independent rect. 2 1
35 78.98 temperature 10.0 30 > th dose independent rect. 3 23
36 78.98 radiation 1.0 30 < th dose dependent rect. 2 1
41 78.98 precipitation 0.1 30 < th dose dependent rect. 2 1
42 79.06 humidity 50.0 30 > th dose dependent rect. 2 1
48 79.29 radiation 1.0 4320 < th dose dependent rect. 3 1
62 79.54 wind 9.0 1440 < th dose independent rect. 3 1
63 79.54 temperature 10.0 1440 > th dose independent rect. 3 1
66 79.54 temperature 30.0 1440 < th dose independent rect. 3 1
70 79.54 humidity 50.0 1440 > th dose independent rect. 3 1
79 79.54 atmosphere 995.0 1440 > th dose independent rect. 3 1
80 79.54 radiation 1.0 1440 < th dose independent rect. 3 1
100 79.54 temperature 10.0 1440 > th dose independent rect. 4 23
108 79.74 atmosphere 1015.0 30 < th dose dependent rect. 2 1
110 80.02 wind 1.0 30 > th dose independent rect. 2 1
114 80.69 temperature 30.0 30 < th dose dependent rect. 2 1
122 82.14 wind 9.0 30 < th dose independent rect. 3 23
123 82.15 atmosphere 995.0 30 > th dose independent rect. 3 23
170 83.91 precipitation 0.1 30 < th dose independent rect. 3 23
171 83.91 precipitation 0.1 30 < th dose dependent rect. 3 23
197 88.96 humidity 50.0 30 > th dose independent rect. 3 23
253 93.96 humidity 90.0 90 < th dose independent rect. 2 1
255 94.17 temperature 30.0 30 < th dose independent rect. 3 23
261 94.90 wind 1.0 10 < th dose independent rect. 24 3
296 97.24 atmosphere 1015.0 30 < th dose independent rect. 3 23
337 97.88 temperature 25.0 270 > th dose independent rect. 23 4
341 97.91 wind 1.0 10 < th dose independent rect. 14 13
347 98.01 wind 1.0 10 < th dose independent rect. 17 10
373 98.59 wind 1.0 10 < th dose independent rect. 7 20
398 99.37 temperature 25.0 270 > th dose dependent rect. 23 4
409 99.52 humidity 90.0 10 > th dose independent rect. 24 3
433 99.67 temperature 25.0 270 > th dose dependent rect. 23 7
454 100.01 wind 9.0 30 < th dose dependent rect. 3 23
461 100.09 temperature 10.0 30 > th dose dependent rect. 3 23
552 100.90 atmosphere 995.0 720 > th dose independent rect. 23 16
556 100.96 temperature 10.0 720 > th dose independent rect. 15 8
557 100.96 temperature 10.0 720 > th dose independent rect. 23 16
560 101.02 radiation 10.0 30 < th dose dependent rect. 3 23
563 101.04 precipitation 0.1 720 < th dose independent rect. 15 8
564 101.04 precipitation 0.1 720 < th dose dependent rect. 15 8
566 101.08 wind 9.0 720 < th dose independent rect. 3 8
571 101.14 temperature 10.0 720 > th dose independent rect. 3 8
572 101.14 atmosphere 995.0 720 > th dose independent rect. 3 8
573 101.14 temperature 10.0 720 > th dose independent rect. 11 16
578 101.18 humidity 50.0 720 > th dose independent rect. 3 8
580 101.21 wind 1.0 30 < th dose independent rect. 2 10
595 101.39 wind 1.0 30 > th dose independent rect. 3 23
654 101.68 wind 3.0 30 < th dose dependent rect. 2 6
670 101.85 atmosphere 995.0 720 > th dose independent rect. 15 8
710 101.99 wind 1.0 10 > th dose independent sin 16 NA
723 102.07 atmosphere 995.0 720 > th dose independent rect. 11 16
728 102.14 atmosphere 995.0 720 > th dose independent rect. 7 8
729 102.15 atmosphere 1000.0 720 > th dose independent rect. 14 1
735 102.20 wind 9.0 720 < th dose independent rect. 19 8
736 102.21 precipitation 0.1 720 < th dose independent rect. 11 16
737 102.21 precipitation 0.1 720 < th dose dependent rect. 11 16
800 102.27 radiation 40.0 30 < th dose independent rect. 14 12
802 102.27 wind 3.0 10 < th dose dependent rect. 22 5
805 102.29 temperature 10.0 720 > th dose independent rect. 7 8
807 102.29 atmosphere 1015.0 720 < th dose independent rect. 7 8
808 102.29 temperature 10.0 720 > th dose independent rect. 15 16
811 102.32 wind 3.0 30 < th dose dependent rect. 2 11
819 102.41 humidity 50.0 30 > th dose dependent rect. 3 23
830 102.52 radiation 40.0 10 < th dose dependent rect. 14 12
835 102.54 temperature 10.0 720 > th dose independent rect. 19 8
836 102.54 temperature 30.0 720 < th dose independent rect. 19 8
837 102.54 humidity 50.0 720 > th dose independent rect. 19 8
838 102.54 atmosphere 995.0 720 > th dose independent rect. 19 8
839 102.54 radiation 1.0 720 < th dose independent rect. 19 8
844 102.54 wind 9.0 10 < th dose independent rect. 14 12
845 102.54 temperature 10.0 720 > th dose independent rect. 3 16
848 102.54 radiation 1.0 720 < th dose dependent rect. 19 8
858 102.58 precipitation 0.1 720 < th dose independent rect. 19 8
859 102.58 precipitation 0.1 720 < th dose dependent rect. 19 8
862 102.62 atmosphere 1000.0 10 > th dose independent rect. 2 12
865 102.63 precipitation 0.1 720 < th dose independent rect. 7 8
866 102.63 precipitation 0.1 720 < th dose dependent rect. 7 8
868 102.64 precipitation 0.1 10 < th dose independent rect. 2 12
869 102.64 precipitation 0.1 10 < th dose dependent rect. 2 12
870 102.65 atmosphere 1000.0 10 > th dose independent rect. 14 12
902 102.70 atmosphere 995.0 30 > th dose dependent rect. 3 23
921 102.78 wind 9.0 720 < th dose dependent rect. 2 1
930 102.85 atmosphere 1015.0 720 < th dose independent rect. 3 8
931 102.85 humidity 60.0 10 > th dose independent rect. 14 12
940 102.90 temperature 10.0 10 > th dose independent rect. 2 12
942 102.90 temperature 10.0 10 > th dose independent rect. 14 12
944 102.90 atmosphere 1015.0 10 < th dose independent rect. 2 12
972 103.01 atmosphere 995.0 720 > th dose independent rect. 15 16
978 103.04 radiation 10.0 30 < th dose independent rect. 3 23
980 103.06 precipitation 0.1 720 < th dose independent rect. 3 8
981 103.06 precipitation 0.1 720 < th dose dependent rect. 3 8
988 103.09 precipitation 0.1 10 < th dose independent rect. 14 12
989 103.09 atmosphere 995.0 720 > th dose independent rect. 15 23
991 103.09 precipitation 0.1 10 < th dose dependent rect. 14 12
996 103.12 precipitation 0.1 720 < th dose independent rect. 14 1
998 103.12 precipitation 0.1 720 < th dose dependent rect. 14 1
999 103.13 wind 1.0 720 > th dose independent rect. 15 8