Os04g0594800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Oligopeptide transporter OPT superfamily protein.
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Os04g0594800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Oligopeptide transporter OPT superfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.24 | 0.449 | 3.05 | -0.297 | 0.0596 | 1.52 | -0.022 | -15.5 | -0.075 | 8.73 | 55.6 | 8 | 6.58 | -- |
| 113.31 | 0.5 | 3.02 | -0.0949 | 0.038 | 0.424 | 0.722 | -- | -0.0847 | 4.59 | 54.98 | 6 | 6.76 | -- |
| 91.24 | 0.445 | 3.05 | -0.297 | 0.0601 | 1.52 | -- | -15.4 | -0.075 | 8.59 | 55.64 | 7 | 6.6 | -- |
| 114.35 | 0.498 | 3.02 | -0.0973 | 0.0703 | 0.37 | -- | -- | -0.0863 | 7.3 | 54 | 2 | 9.17 | -- |
| 91.44 | 0.445 | 3.05 | -0.296 | -- | 1.5 | -- | -15.4 | -0.0751 | -- | 55.57 | 7 | 6.6 | -- |
| 114.35 | 0.501 | 3.02 | -0.0823 | 0.000276 | -- | -0.652 | -- | -0.0931 | 16.2 | -- | -- | -- | -- |
| 115.36 | 0.503 | 3.02 | -0.0881 | 0.0542 | -- | -- | -- | -0.0967 | 9.67 | -- | -- | -- | -- |
| 114.61 | 0.499 | 3.02 | -0.0962 | -- | 0.339 | -- | -- | -0.0862 | -- | 54.08 | 2 | 8.98 | -- |
| 114.59 | 0.499 | 3.02 | -- | 0.0691 | 0.359 | -- | -- | -0.0761 | 7.85 | 54 | 2 | 8.84 | -- |
| 115.53 | 0.502 | 3.03 | -0.0886 | -- | -- | -- | -- | -0.0966 | -- | -- | -- | -- | -- |
| 115.56 | 0.503 | 3.02 | -- | 0.0544 | -- | -- | -- | -0.0869 | 9.79 | -- | -- | -- | -- |
| 114.85 | 0.499 | 3.02 | -- | -- | 0.33 | -- | -- | -0.0757 | -- | 54.54 | 2 | 9.08 | -- |
| 115.74 | 0.502 | 3.02 | -- | -- | -- | -- | -- | -0.0868 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.55 | radiation | 40 | 90 | > th | dose independent | rect. | 15 | 1 |
| 18 | 88.55 | radiation | 40 | 90 | > th | dose dependent | rect. | 15 | 1 |
| 35 | 88.62 | radiation | 20 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 97 | 88.94 | radiation | 20 | 10 | > th | dose independent | rect. | 16 | 1 |
| 238 | 91.05 | wind | 1 | 90 | < th | dose dependent | rect. | 15 | 1 |
| 256 | 91.39 | humidity | 60 | 10 | < th | dose independent | rect. | 15 | 1 |
| 313 | 92.61 | humidity | 60 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 341 | 93.68 | wind | 1 | 90 | < th | dose independent | rect. | 15 | 1 |
| 428 | 94.73 | wind | 3 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 430 | 94.78 | wind | 3 | 10 | < th | dose independent | rect. | 16 | 1 |
| 531 | 96.43 | humidity | 60 | 10 | < th | dose independent | sin | 12 | NA |
| 551 | 96.73 | humidity | 60 | 10 | > th | dose independent | sin | 12 | NA |
| 554 | 96.85 | humidity | 60 | 90 | < th | dose independent | sin | 13 | NA |
| 565 | 97.14 | humidity | 60 | 10 | < th | dose dependent | sin | 12 | NA |
| 568 | 97.19 | humidity | 60 | 90 | > th | dose independent | sin | 13 | NA |
| 725 | 99.23 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 731 | 99.37 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 963 | 102.37 | radiation | 30 | 30 | < th | dose independent | sin | 13 | NA |