FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0594100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to P-type R2R3 Myb protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.56 (0.113) R2 : 0.412
β1 : -0.223 (0.414) R2dD : 0.00174 R2D : -0.384
β2 : 1.29 (0.162) R2dC : 0.0749 R2C : -0.33
β3 : 8.4 (0.994) R2dE : 1.66 R2E : -1.87
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 29.1 (2.67) R2dD*E : 2.23 R2D*E : -1.34
γ1 : 0.213 (0.155) R2dN8 : 0.00319 R2N8 : -0.428
σ : 1.16
deviance : 617.51
__
_____
C
peak time of C : 5.18
E
wheather : radiation
threshold : 0.9769
memory length : 3540
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 11.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
638.83 1.19 5.58 -0.244 1.27 8.37 0.765 29.1 0.197 5.18 1.019 4256 18 11.1
820.16 1.34 4.46 -1.82 1.35 0.752 1.22 -- 0.478 5.03 5.559 22 18.7 12
617.51 1.16 5.56 -0.223 1.29 8.4 -- 29.1 0.213 5.18 0.9769 3540 18 11.4
781.44 1.31 4.45 -1.91 1.16 3.36 -- -- 0.507 6.06 -0.5519 6839 18.3 11.6
693.71 1.23 5.55 -0.0333 -- 8.55 -- 28.9 0.273 -- 0.8546 3557 18 11.4
821.69 1.34 4.46 -1.84 1.38 -- 1.11 -- 0.464 5.05 -- -- -- --
824.76 1.34 4.47 -1.84 1.39 -- -- -- 0.459 5.12 -- -- -- --
786.28 1.31 4.47 -0.661 -- 3.58 -- -- 0.689 -- -4.373 19420 17.6 11.8
674.34 1.21 4.49 -- 1.36 2.69 -- -- 0.474 5.23 0.04229 47520 18.4 9.52
926.43 1.42 4.48 -1.79 -- -- -- -- 0.494 -- -- -- -- --
914.23 1.41 4.42 -- 1.36 -- -- -- 0.664 5.17 -- -- -- --
734.57 1.26 4.5 -- -- 3.77 -- -- 0.695 -- -5.129 42451 17.6 11.7
1011.22 1.48 4.44 -- -- -- -- -- 0.693 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 641.15 humidity 90 14400 < th dose independent rect. 21 9
2 642.02 radiation 20 14400 < th dose independent rect. 5 1
8 645.47 radiation 1 4320 > th dose dependent rect. 18 11
17 649.96 humidity 90 43200 < th dose independent rect. 5 5
21 650.25 humidity 90 43200 < th dose independent rect. 4 8
24 650.61 humidity 80 43200 > th dose dependent rect. 9 1
26 651.20 humidity 90 14400 < th dose independent rect. 1 2
27 651.25 humidity 90 14400 > th dose independent rect. 21 9
32 651.72 radiation 1 4320 > th dose dependent rect. 18 1
47 652.53 humidity 90 14400 > th dose independent rect. 1 1
49 652.73 radiation 1 4320 < th dose independent rect. 18 12
56 653.76 humidity 90 43200 > th dose independent rect. 5 2
65 654.31 humidity 90 14400 > th dose independent rect. 24 7
67 654.51 humidity 80 43200 > th dose dependent rect. 5 7
68 654.53 radiation 40 14400 < th dose independent rect. 15 1
74 654.79 radiation 40 14400 < th dose independent rect. 15 13
79 655.19 radiation 30 14400 < th dose independent rect. 16 15
84 655.63 humidity 80 43200 > th dose dependent rect. 6 5
85 655.65 radiation 40 14400 < th dose independent rect. 15 5
89 655.84 radiation 40 14400 < th dose independent rect. 15 3
93 656.27 radiation 40 14400 < th dose independent rect. 15 10
98 656.37 humidity 90 43200 > th dose independent rect. 4 9
108 656.79 humidity 90 43200 > th dose independent rect. 5 5
109 656.86 radiation 30 14400 > th dose dependent rect. 16 16
120 657.48 radiation 1 4320 < th dose independent rect. 18 10
125 657.60 humidity 90 14400 > th dose independent rect. 24 3
132 657.87 humidity 90 43200 < th dose independent rect. 8 2
151 658.39 radiation 1 4320 < th dose independent rect. 18 2
153 658.41 radiation 1 4320 < th dose independent rect. 18 7
166 658.83 humidity 90 43200 > th dose independent rect. 8 2
175 659.21 radiation 1 43200 > th dose independent rect. 18 11
187 659.59 radiation 30 14400 < th dose independent rect. 7 1
198 660.10 radiation 30 14400 < th dose independent rect. 24 8
201 660.16 radiation 30 14400 < th dose independent rect. 2 6
211 660.31 radiation 30 14400 < th dose independent rect. 19 13
216 660.45 radiation 1 4320 > th dose independent rect. 18 12
226 660.99 humidity 90 43200 < th dose independent sin 2 NA
263 662.24 radiation 30 14400 > th dose dependent rect. 7 1
287 662.78 radiation 1 4320 < th dose dependent rect. 2 3
297 663.05 wind 5 43200 < th dose independent rect. 12 20
304 663.32 humidity 90 14400 < th dose independent sin 11 NA
307 663.35 wind 5 43200 > th dose independent rect. 12 20
363 664.40 wind 5 43200 < th dose independent rect. 4 17
364 664.40 wind 5 43200 < th dose independent rect. 24 21
377 664.61 wind 9 43200 < th dose independent rect. 5 1
401 664.88 radiation 1 4320 > th dose independent rect. 18 1
420 664.95 radiation 1 43200 < th dose independent rect. 18 11
425 664.97 temperature 15 43200 > th dose independent rect. 5 1
431 665.00 wind 5 43200 < th dose independent rect. 6 11
432 665.06 wind 5 43200 > th dose independent rect. 4 17
437 665.11 wind 5 43200 < th dose independent rect. 4 13
442 665.15 wind 5 43200 > th dose independent rect. 24 21
487 665.52 wind 5 43200 > th dose independent rect. 6 11
494 665.59 wind 5 43200 < th dose independent sin 23 NA
504 665.65 humidity 90 43200 > th dose independent sin 2 NA
518 665.76 wind 5 43200 < th dose independent rect. 6 19
564 666.14 wind 5 43200 > th dose independent sin 23 NA
582 666.25 wind 5 43200 > th dose independent rect. 6 19
606 666.43 wind 3 43200 > th dose dependent rect. 4 13
609 666.44 wind 3 43200 > th dose dependent rect. 24 21
617 666.50 wind 3 43200 > th dose dependent rect. 2 19
630 666.54 wind 3 43200 > th dose dependent rect. 6 11
690 666.88 radiation 1 43200 > th dose independent rect. 18 1
715 666.93 radiation 30 14400 > th dose independent rect. 16 16
717 666.93 wind 3 43200 > th dose dependent sin 0 NA
735 667.01 wind 5 43200 < th dose independent no NA NA
737 667.01 wind 3 43200 > th dose dependent rect. 11 21
773 667.24 wind 5 43200 < th dose independent sin 16 NA
775 667.25 radiation 1 4320 < th dose dependent rect. 19 11
778 667.28 radiation 10 14400 > th dose independent rect. 5 1
799 667.32 wind 5 43200 < th dose independent rect. 18 23
808 667.35 wind 5 43200 > th dose independent sin 16 NA
855 667.58 wind 1 43200 > th dose dependent rect. 9 7
874 667.72 wind 5 43200 > th dose independent no NA NA
899 667.85 radiation 1 4320 < th dose independent rect. 18 16
910 667.92 wind 5 43200 > th dose independent rect. 18 23
925 667.97 wind 9 43200 > th dose dependent rect. 19 6
943 668.13 temperature 15 43200 < th dose independent rect. 5 1
958 668.21 wind 7 43200 < th dose dependent rect. 9 7
986 668.33 wind 5 43200 < th dose independent rect. 9 7
999 668.46 wind 5 43200 > th dose independent rect. 9 7