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Os04g0592500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phosphoenolpyruvate carboxykinase (ATP) family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.76 (0.0192) R2 : 0.297
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.608 (0.0465) R2dC : 0.264 R2C : 0.259
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.178 (0.0403) R2dN8 : 0.0387 R2N8 : 0.0337
σ : 0.361
deviance : 59.71
__
_____
C
peak time of C : 1.86
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.61 0.296 8.76 -0.66 0.261 -0.667 0.537 -0.178 0.149 9.71 0.1309 110 -- --
39.68 0.293 8.76 -0.639 0.263 -0.662 0.456 -- 0.155 9.64 0.1322 111 -- --
39.82 0.294 8.75 -0.639 0.25 -0.66 -- 0.173 0.15 9.54 0.15 119 -- --
39.88 0.294 8.76 -0.62 0.237 -0.671 -- -- 0.16 10.2 0.15 126 -- --
41.28 0.299 8.77 -0.641 -- -0.557 -- 0.144 0.128 -- 0.13 166 -- --
47.13 0.322 8.78 -0.691 0.621 -- 0.0101 -- 0.101 1.89 -- -- -- --
47.13 0.321 8.78 -0.691 0.621 -- -- -- 0.101 1.89 -- -- -- --
41.33 0.299 8.77 -0.637 -- -0.569 -- -- 0.13 -- 0.1501 179 -- --
50.34 0.33 8.75 -- 0.281 -0.73 -- -- 0.224 11 0.1305 124 -- --
70.44 0.392 8.77 -0.665 -- -- -- -- 0.115 -- -- -- -- --
59.71 0.361 8.76 -- 0.608 -- -- -- 0.178 1.86 -- -- -- --
52.17 0.336 8.75 -- -- -0.562 -- -- 0.158 -- 0.0503 187 -- --
82.11 0.423 8.76 -- -- -- -- -- 0.189 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.70 atmosphere 1010.0 270 < th dose independent rect. 17 10
3 38.17 radiation 20.0 30 < th dose dependent sin 12 NA
4 38.23 temperature 15.0 270 > th dose independent rect. 17 11
5 38.24 radiation 1.0 90 > th dose independent rect. 15 18
8 38.42 temperature 30.0 270 < th dose independent rect. 8 20
13 38.53 radiation 1.0 30 > th dose dependent rect. 15 18
17 38.68 temperature 20.0 90 > th dose dependent rect. 5 4
18 38.72 atmosphere 1010.0 90 < th dose independent rect. 20 9
21 38.76 temperature 10.0 90 > th dose dependent rect. 20 9
33 38.95 humidity 50.0 270 > th dose independent rect. 17 11
34 38.99 radiation 1.0 270 > th dose independent rect. 11 22
38 39.02 radiation 10.0 270 < th dose independent rect. 17 11
41 39.02 radiation 20.0 270 < th dose dependent rect. 17 11
47 39.07 precipitation 0.1 270 < th dose independent rect. 4 13
49 39.07 temperature 20.0 270 > th dose dependent rect. 5 2
50 39.07 precipitation 0.1 270 < th dose dependent rect. 4 13
51 39.09 radiation 1.0 90 > th dose independent rect. 14 21
53 39.09 temperature 10.0 90 > th dose dependent rect. 5 15
60 39.20 temperature 10.0 270 > th dose dependent rect. 3 14
63 39.23 atmosphere 1010.0 10 < th dose independent rect. 20 10
70 39.28 temperature 10.0 270 > th dose dependent rect. 18 9
72 39.30 humidity 70.0 90 > th dose independent rect. 18 11
75 39.30 temperature 15.0 10 > th dose dependent rect. 20 9
79 39.32 temperature 30.0 270 < th dose independent rect. 17 11
83 39.32 temperature 10.0 270 > th dose independent rect. 4 13
84 39.32 atmosphere 1015.0 270 < th dose independent rect. 4 13
88 39.34 wind 9.0 270 < th dose independent rect. 4 13
91 39.35 humidity 70.0 270 > th dose independent rect. 9 18
92 39.35 humidity 70.0 270 > th dose independent rect. 8 20
103 39.41 wind 9.0 270 < th dose independent rect. 17 11
106 39.41 humidity 90.0 10 < th dose dependent rect. 15 18
107 39.41 radiation 1.0 90 < th dose dependent rect. 20 23
112 39.44 temperature 10.0 10 > th dose dependent rect. 6 14
115 39.46 temperature 25.0 10 > th dose dependent rect. 15 18
119 39.49 radiation 1.0 90 > th dose independent sin 11 NA
123 39.50 radiation 1.0 90 < th dose independent sin 12 NA
135 39.54 temperature 25.0 30 > th dose independent rect. 6 3
140 39.55 humidity 70.0 270 > th dose independent rect. 15 12
149 39.58 radiation 10.0 270 < th dose dependent rect. 8 19
152 39.59 radiation 10.0 720 < th dose dependent rect. 17 2
163 39.63 humidity 90.0 30 < th dose independent rect. 6 3
194 39.74 radiation 1.0 270 < th dose independent rect. 6 22
196 39.75 humidity 70.0 90 > th dose independent rect. 11 18
206 39.77 radiation 1.0 720 < th dose dependent rect. 24 6
208 39.78 atmosphere 995.0 270 > th dose independent rect. 17 11
211 39.80 radiation 1.0 90 < th dose independent rect. 20 23
215 39.82 temperature 15.0 10 > th dose independent rect. 9 21
224 39.84 temperature 30.0 270 < th dose independent rect. 8 11
226 39.85 humidity 70.0 720 > th dose independent rect. 17 2
233 39.87 temperature 30.0 720 < th dose independent rect. 9 3
241 39.90 atmosphere 1010.0 720 < th dose independent rect. 17 2
242 39.90 atmosphere 1015.0 90 < th dose independent rect. 9 20
261 39.98 radiation 1.0 90 > th dose dependent sin 12 NA
262 39.98 temperature 25.0 10 > th dose dependent rect. 15 20
267 40.00 temperature 20.0 90 > th dose independent rect. 20 9
272 40.02 radiation 1.0 720 < th dose independent rect. 24 6
278 40.02 humidity 90.0 720 < th dose dependent rect. 12 4
280 40.03 radiation 1.0 90 < th dose dependent rect. 18 23
291 40.05 radiation 10.0 720 < th dose independent rect. 17 2
297 40.07 humidity 50.0 270 > th dose dependent rect. 8 19
300 40.08 atmosphere 1015.0 270 < th dose independent rect. 7 21
305 40.09 temperature 30.0 90 < th dose independent rect. 11 18
311 40.11 radiation 1.0 90 > th dose independent rect. 4 5
331 40.12 radiation 1.0 270 < th dose dependent rect. 5 23
343 40.15 temperature 30.0 720 < th dose independent rect. 24 12
354 40.18 atmosphere 1015.0 10 < th dose independent rect. 9 21
356 40.18 radiation 1.0 720 < th dose dependent rect. 24 14
360 40.19 atmosphere 995.0 90 > th dose independent rect. 9 20
373 40.21 radiation 1.0 90 < th dose dependent rect. 15 23
375 40.22 radiation 1.0 90 < th dose dependent no NA NA
377 40.22 radiation 1.0 90 < th dose dependent rect. 9 23
382 40.23 radiation 1.0 90 < th dose dependent rect. 12 23
412 40.28 radiation 1.0 90 < th dose independent rect. 18 23
436 40.30 radiation 1.0 720 < th dose dependent rect. 24 17
440 40.31 radiation 1.0 720 < th dose independent rect. 24 19
444 40.31 humidity 50.0 270 > th dose dependent rect. 7 21
461 40.35 atmosphere 1015.0 270 < th dose independent rect. 23 13
471 40.36 atmosphere 1015.0 720 < th dose independent rect. 7 14
506 40.41 radiation 1.0 90 < th dose independent rect. 8 23
511 40.42 temperature 25.0 10 > th dose dependent rect. 3 6
518 40.43 atmosphere 995.0 10 > th dose independent rect. 9 21
531 40.45 radiation 20.0 720 < th dose independent rect. 16 5
540 40.46 precipitation 0.1 720 < th dose independent rect. 19 14
541 40.46 precipitation 0.1 30 < th dose independent rect. 15 18
547 40.46 precipitation 0.1 720 < th dose dependent rect. 19 14
548 40.46 precipitation 0.1 30 < th dose dependent rect. 15 18
549 40.46 radiation 1.0 720 < th dose dependent rect. 24 19
590 40.53 temperature 15.0 1440 > th dose independent rect. 10 6
640 40.57 radiation 1.0 90 < th dose dependent rect. 15 16
667 40.59 humidity 50.0 270 > th dose dependent rect. 16 11
677 40.60 radiation 1.0 90 < th dose independent rect. 15 23
684 40.61 radiation 1.0 90 > th dose independent no NA NA
685 40.61 radiation 1.0 90 < th dose independent no NA NA
687 40.61 precipitation 0.1 270 < th dose independent rect. 17 11
689 40.61 radiation 1.0 90 > th dose independent rect. 4 15
737 40.61 precipitation 0.1 270 < th dose dependent rect. 17 11
743 40.62 radiation 1.0 90 < th dose independent rect. 12 23
774 40.63 radiation 1.0 90 < th dose dependent rect. 17 14
793 40.65 temperature 15.0 270 > th dose independent rect. 7 21
812 40.67 precipitation 0.1 270 < th dose independent rect. 12 11
817 40.67 precipitation 0.1 270 < th dose dependent rect. 12 11
845 40.71 temperature 30.0 90 < th dose independent rect. 5 4
846 40.71 radiation 40.0 90 < th dose independent rect. 5 4
848 40.71 precipitation 0.1 720 < th dose independent rect. 21 10
855 40.71 precipitation 0.1 720 < th dose dependent rect. 21 10
862 40.72 humidity 50.0 720 > th dose dependent rect. 18 1
869 40.73 precipitation 0.1 90 < th dose independent rect. 5 4
874 40.73 precipitation 0.1 90 < th dose dependent rect. 5 4
884 40.75 humidity 80.0 270 > th dose independent rect. 4 3
885 40.75 wind 9.0 90 < th dose independent rect. 5 4
886 40.75 temperature 10.0 90 > th dose independent rect. 5 4
888 40.75 humidity 50.0 90 > th dose independent rect. 5 4
890 40.75 atmosphere 995.0 90 > th dose independent rect. 5 4
891 40.75 atmosphere 1015.0 90 < th dose independent rect. 5 4
907 40.75 radiation 1.0 30 > th dose dependent rect. 5 4
921 40.76 atmosphere 1005.0 30 > th dose independent rect. 6 3
925 40.76 radiation 1.0 90 < th dose independent rect. 17 14
938 40.77 radiation 1.0 90 < th dose independent rect. 15 16
967 40.78 atmosphere 1000.0 90 > th dose dependent rect. 5 4
983 40.80 temperature 30.0 270 < th dose independent rect. 8 7
989 40.80 atmosphere 1000.0 10 > th dose dependent rect. 6 3