Os04g0591300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0591300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 259.63 | 0.757 | 3.59 | -0.732 | 1.04 | 0.814 | -1 | -0.91 | 0.203 | 9.93 | 17.63 | 228 | -- | -- |
| 261.38 | 0.753 | 3.59 | -0.762 | 1.03 | 0.766 | -0.719 | -- | 0.191 | 9.76 | 18.84 | 217 | -- | -- |
| 262.16 | 0.754 | 3.59 | -0.759 | 1.04 | 0.772 | -- | -0.371 | 0.189 | 9.84 | 17 | 220 | -- | -- |
| 262.44 | 0.755 | 3.59 | -0.795 | 1.03 | 0.8 | -- | -- | 0.191 | 9.79 | 19.14 | 215 | -- | -- |
| 279.02 | 0.778 | 3.59 | -0.75 | -- | 1.02 | -- | -0.975 | 0.202 | -- | 19.15 | 803 | -- | -- |
| 276.34 | 0.779 | 3.61 | -0.822 | 0.946 | -- | -0.627 | -- | 0.118 | 7.56 | -- | -- | -- | -- |
| 277.43 | 0.78 | 3.61 | -0.838 | 0.946 | -- | -- | -- | 0.119 | 7.54 | -- | -- | -- | -- |
| 279.02 | 0.778 | 3.62 | -0.978 | -- | 1.06 | -- | -- | 0.242 | -- | 9.429 | 853 | -- | -- |
| 277.17 | 0.775 | 3.58 | -- | 1.03 | 0.904 | -- | -- | 0.278 | 9.99 | 20 | 213 | -- | -- |
| 325.36 | 0.843 | 3.63 | -0.824 | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
| 295.93 | 0.805 | 3.59 | -- | 0.939 | -- | -- | -- | 0.212 | 7.6 | -- | -- | -- | -- |
| 291.52 | 0.795 | 3.6 | -- | -- | 1.13 | -- | -- | 0.339 | -- | 10.58 | 830 | -- | -- |
| 343.26 | 0.865 | 3.61 | -- | -- | -- | -- | -- | 0.225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 259.30 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 11 |
| 2 | 259.32 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 3 | 259.40 | radiation | 20 | 270 | < th | dose independent | rect. | 8 | 23 |
| 5 | 259.55 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 8 | 259.82 | radiation | 20 | 270 | < th | dose independent | sin | 4 | NA |
| 10 | 259.89 | radiation | 10 | 720 | > th | dose independent | rect. | 7 | 3 |
| 11 | 259.93 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 13 |
| 16 | 260.07 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 10 |
| 17 | 260.08 | radiation | 20 | 270 | < th | dose independent | rect. | 14 | 23 |
| 27 | 260.28 | radiation | 20 | 270 | < th | dose independent | rect. | 24 | 23 |
| 32 | 260.33 | wind | 7 | 30 | < th | dose independent | rect. | 7 | 23 |
| 35 | 260.39 | radiation | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 39 | 260.43 | radiation | 20 | 270 | > th | dose independent | rect. | 12 | 23 |
| 43 | 260.46 | radiation | 40 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 45 | 260.51 | radiation | 40 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 46 | 260.54 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 23 |
| 50 | 260.56 | radiation | 40 | 270 | < th | dose dependent | sin | 3 | NA |
| 68 | 260.80 | radiation | 30 | 270 | > th | dose dependent | rect. | 14 | 20 |
| 77 | 260.91 | radiation | 40 | 270 | > th | dose independent | rect. | 14 | 20 |
| 78 | 260.94 | radiation | 20 | 270 | > th | dose independent | sin | 4 | NA |
| 91 | 261.05 | radiation | 1 | 720 | > th | dose dependent | rect. | 8 | 2 |
| 114 | 261.28 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 119 | 261.32 | radiation | 1 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 121 | 261.34 | radiation | 20 | 270 | < th | dose independent | no | NA | NA |
| 130 | 261.39 | radiation | 40 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 171 | 261.67 | radiation | 20 | 90 | > th | dose independent | rect. | 8 | 9 |
| 188 | 261.69 | radiation | 20 | 270 | > th | dose independent | rect. | 15 | 23 |
| 226 | 261.85 | radiation | 20 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 254 | 262.01 | radiation | 1 | 270 | > th | dose dependent | sin | 4 | NA |
| 260 | 262.05 | humidity | 90 | 10 | < th | dose independent | rect. | 5 | 2 |
| 289 | 262.11 | radiation | 40 | 270 | > th | dose independent | sin | 12 | NA |
| 319 | 262.19 | radiation | 40 | 270 | < th | dose dependent | no | NA | NA |
| 409 | 262.35 | radiation | 20 | 270 | > th | dose independent | no | NA | NA |
| 525 | 262.37 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 7 |
| 560 | 262.49 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 602 | 262.60 | radiation | 40 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 667 | 262.75 | radiation | 20 | 720 | < th | dose independent | rect. | 19 | 15 |
| 706 | 262.81 | temperature | 30 | 30 | < th | dose independent | rect. | 7 | 23 |
| 749 | 262.90 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 1 |
| 779 | 262.91 | radiation | 1 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 804 | 262.94 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 1 | 8 |
| 810 | 262.96 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 840 | 263.01 | radiation | 20 | 90 | < th | dose independent | rect. | 17 | 19 |
| 842 | 263.01 | radiation | 10 | 270 | > th | dose dependent | sin | 11 | NA |
| 919 | 263.11 | radiation | 20 | 720 | < th | dose independent | rect. | 19 | 17 |
| 969 | 263.18 | radiation | 40 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 970 | 263.19 | radiation | 30 | 270 | > th | dose dependent | sin | 12 | NA |
| 994 | 263.20 | radiation | 20 | 270 | < th | dose independent | rect. | 8 | 12 |
| 995 | 263.20 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |