Os04g0590400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GRAS transcription factor domain containing protein.
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Os04g0590400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GRAS transcription factor domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.61 | 0.471 | 7.71 | -0.592 | 0.715 | 1.31 | -0.867 | 0.298 | -0.304 | 6.44 | 9.61 | 34 | -- | -- |
| 100.68 | 0.467 | 7.72 | -0.632 | 0.715 | 1.32 | -0.9 | -- | -0.316 | 6.4 | 13.19 | 33 | -- | -- |
| 102.43 | 0.471 | 7.71 | -0.577 | 0.716 | 1.32 | -- | 0.509 | -0.295 | 6.5 | 8.903 | 34 | -- | -- |
| 102.64 | 0.472 | 7.72 | -0.648 | 0.716 | 1.33 | -- | -- | -0.313 | 6.52 | 13.6 | 39 | -- | -- |
| 126.04 | 0.526 | 7.72 | -0.522 | -- | 0.986 | -- | 0.285 | -0.244 | -- | 8.903 | 34 | -- | -- |
| 118.55 | 0.51 | 7.68 | -0.368 | 0.61 | -- | -0.596 | -- | -0.129 | 8.31 | -- | -- | -- | -- |
| 119.5 | 0.512 | 7.68 | -0.384 | 0.608 | -- | -- | -- | -0.128 | 8.63 | -- | -- | -- | -- |
| 125.98 | 0.523 | 7.72 | -0.563 | -- | 0.998 | -- | -- | -0.256 | -- | 14.18 | 2 | -- | -- |
| 112.81 | 0.497 | 7.69 | -- | 0.642 | 0.998 | -- | -- | -0.204 | 6.95 | 14.4 | 43 | -- | -- |
| 140.34 | 0.554 | 7.69 | -0.382 | -- | -- | -- | -- | -0.123 | -- | -- | -- | -- | -- |
| 123.39 | 0.52 | 7.67 | -- | 0.607 | -- | -- | -- | -0.0851 | 8.67 | -- | -- | -- | -- |
| 133.88 | 0.539 | 7.7 | -- | -- | 0.821 | -- | -- | -0.174 | -- | 11.4 | 2 | -- | -- |
| 144.19 | 0.56 | 7.68 | -- | -- | -- | -- | -- | -0.0801 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.51 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 4 | 98.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 5 | 98.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 15 | 99.81 | wind | 9 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 25 | 100.12 | wind | 9 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 32 | 100.35 | wind | 9 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 36 | 100.50 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 38 | 100.55 | temperature | 15 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 42 | 100.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 44 | 100.64 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 60 | 100.87 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 102 | 101.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 110 | 101.45 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 131 | 101.54 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 133 | 101.58 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 11 |
| 139 | 101.64 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 146 | 101.71 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 11 |
| 158 | 101.85 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 170 | 101.93 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 186 | 102.00 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 194 | 102.05 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 214 | 102.18 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 216 | 102.19 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 222 | 102.24 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 268 | 102.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 321 | 102.62 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 326 | 102.65 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 327 | 102.66 | temperature | 10 | 90 | > th | dose dependent | sin | 19 | NA |
| 381 | 102.83 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 5 |
| 554 | 103.40 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 11 |
| 581 | 103.44 | temperature | 30 | 30 | < th | dose dependent | sin | 17 | NA |
| 719 | 103.69 | wind | 7 | 4320 | > th | dose dependent | sin | 13 | NA |
| 870 | 103.93 | wind | 9 | 4320 | > th | dose independent | sin | 12 | NA |
| 908 | 103.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 946 | 104.03 | radiation | 10 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 1000 | 104.09 | wind | 7 | 4320 | < th | dose independent | sin | 13 | NA |