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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0589800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Late embryogenesis abundant (LEA) group 1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.29 (0.0395) R2 : 0.335
β1 : -1.36 (0.145) R2dD : 0.133 R2D : 0.0874
β2 : 1.17 (0.103) R2dC : 0.189 R2C : 0.164
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.509 (0.0843) R2dN8 : 0.0712 R2N8 : 0.0171
σ : 0.743
deviance : 251.56
__
_____
C
peak time of C : 6.59
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
228.47 0.71 4.3 -1.3 1.35 -0.751 -1.91 2.28 -0.635 6.23 91.98 35 -- --
236.52 0.716 4.32 -1.28 1.37 -0.614 -1.33 -- -0.609 6.33 91.99 30 -- --
236.14 0.716 4.31 -1.27 1.39 -0.887 -- 1.83 -0.657 5.98 92 34 -- --
240.11 0.722 4.32 -1.28 1.4 -0.735 -- -- -0.625 6.06 91.88 31 -- --
316.88 0.829 4.3 -1.32 -- 0.00628 -- 1.71 -0.496 -- 92.99 21 -- --
243.78 0.732 4.3 -1.32 1.17 -- -1.77 -- -0.513 6.79 -- -- -- --
251.56 0.743 4.29 -1.36 1.17 -- -- -- -0.509 6.59 -- -- -- --
283.97 0.785 4.31 -1.37 -- 1.01 -- -- -0.423 -- 66.67 445 -- --
282.57 0.783 4.29 -- 1.45 -0.866 -- -- -0.517 5.96 91.16 26 -- --
322.83 0.84 4.32 -1.33 -- -- -- -- -0.485 -- -- -- -- --
300.06 0.81 4.26 -- 1.15 -- -- -- -0.358 6.65 -- -- -- --
332.32 0.849 4.27 -- -- 1.04 -- -- -0.278 -- 64 470 -- --
369.36 0.897 4.28 -- -- -- -- -- -0.338 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 218.92 temperature 30 270 < th dose dependent rect. 3 9
6 220.64 temperature 30 90 < th dose dependent rect. 6 7
10 220.95 temperature 30 10 < th dose dependent rect. 6 7
23 222.26 temperature 15 270 > th dose dependent rect. 3 12
39 222.86 temperature 15 270 > th dose dependent rect. 7 8
54 223.43 temperature 25 270 < th dose independent rect. 3 9
61 223.73 temperature 30 270 < th dose dependent sin 3 NA
84 224.32 temperature 10 270 > th dose dependent sin 4 NA
106 224.70 humidity 90 1440 > th dose dependent rect. 24 1
112 224.87 atmosphere 1005 10 > th dose dependent rect. 24 23
117 224.96 temperature 15 30 > th dose dependent rect. 10 8
120 225.04 temperature 30 270 < th dose dependent rect. 4 15
122 225.07 atmosphere 1010 30 < th dose independent rect. 10 8
124 225.09 atmosphere 1010 270 < th dose independent rect. 8 8
125 225.13 atmosphere 1010 270 < th dose independent rect. 9 6
163 225.56 atmosphere 1005 30 > th dose dependent rect. 24 21
170 225.63 temperature 30 90 < th dose dependent rect. 6 15
182 225.77 atmosphere 1005 10 > th dose dependent rect. 2 21
183 225.79 humidity 90 1440 > th dose dependent rect. 23 4
209 226.02 atmosphere 1005 10 > th dose dependent rect. 2 19
233 226.30 temperature 15 720 > th dose dependent rect. 1 6
236 226.32 temperature 25 270 > th dose independent rect. 2 13
260 226.46 atmosphere 1010 10 < th dose independent sin 0 NA
294 226.79 atmosphere 995 10 > th dose dependent rect. 6 15
307 226.87 temperature 20 720 < th dose dependent rect. 24 12
312 226.91 atmosphere 995 90 > th dose dependent rect. 6 15
313 226.93 humidity 90 1440 > th dose independent rect. 23 1
374 227.27 temperature 10 720 > th dose dependent rect. 23 8
379 227.31 atmosphere 1000 10 > th dose dependent rect. 2 10
418 227.48 atmosphere 1000 30 > th dose dependent rect. 18 18
449 227.64 atmosphere 1010 10 < th dose independent rect. 1 15
457 227.68 atmosphere 1000 10 > th dose dependent rect. 11 23
463 227.72 temperature 20 720 < th dose dependent rect. 3 1
465 227.73 atmosphere 995 270 > th dose dependent rect. 2 8
477 227.78 atmosphere 1010 10 < th dose independent rect. 21 21
497 227.85 humidity 90 270 < th dose independent rect. 9 7
520 227.92 temperature 20 720 < th dose dependent rect. 1 4
558 228.04 atmosphere 1000 270 > th dose dependent rect. 24 10
567 228.07 atmosphere 1005 30 > th dose dependent rect. 24 12
575 228.10 temperature 20 270 > th dose dependent rect. 10 1
630 228.27 humidity 90 1440 < th dose independent rect. 23 1
644 228.30 atmosphere 1000 10 > th dose dependent rect. 4 8
671 228.37 humidity 90 30 > th dose dependent rect. 21 13
675 228.38 humidity 90 43200 < th dose independent rect. 23 2
679 228.38 humidity 90 30 > th dose dependent rect. 21 11
712 228.49 humidity 90 43200 > th dose independent rect. 24 1
718 228.51 atmosphere 1010 10 < th dose independent rect. 1 17
736 228.57 humidity 80 43200 > th dose dependent rect. 14 14
744 228.58 atmosphere 1015 270 < th dose dependent rect. 21 18
760 228.63 temperature 20 270 < th dose dependent rect. 8 10
772 228.66 humidity 80 43200 > th dose dependent rect. 16 11
781 228.68 temperature 20 270 > th dose independent rect. 8 7
851 228.81 humidity 80 43200 > th dose dependent rect. 18 8
858 228.82 humidity 80 43200 > th dose dependent sin 14 NA
890 228.89 humidity 90 43200 < th dose independent rect. 21 6
900 228.90 atmosphere 1005 30 > th dose dependent rect. 24 14
931 228.95 humidity 80 43200 > th dose dependent rect. 19 6
946 228.97 humidity 80 43200 > th dose dependent rect. 21 3
949 228.97 atmosphere 1000 10 > th dose dependent rect. 16 20
967 229.00 atmosphere 1005 90 > th dose independent rect. 17 19
972 229.01 humidity 90 43200 < th dose independent rect. 20 10