Os04g0589700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : U box domain containing protein.
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Os04g0589700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : U box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 310.77 | 0.828 | 5.18 | 1.1 | 0.142 | -1.9 | -0.0351 | -3.02 | -0.196 | 11.8 | 12.16 | 3319 | -- | -- |
| 311.8 | 0.822 | 5.09 | 1.57 | 0.063 | -1.39 | -0.0933 | -- | -0.0574 | 12.1 | 21.89 | 2724 | -- | -- |
| 310.77 | 0.821 | 5.18 | 1.1 | 0.144 | -1.9 | -- | -3.01 | -0.197 | 11.8 | 11.45 | 3317 | -- | -- |
| 311.19 | 0.822 | 5.09 | 1.62 | 0.134 | -1.5 | -- | -- | -0.0679 | 11.7 | 21.74 | 3264 | -- | -- |
| 311.86 | 0.822 | 5.19 | 1.11 | -- | -1.96 | -- | -3.08 | -0.195 | -- | 9.448 | 3457 | -- | -- |
| 379.01 | 0.913 | 5.16 | 1.04 | 0.235 | -- | 0.0408 | -- | -0.368 | 11.8 | -- | -- | -- | -- |
| 379.01 | 0.912 | 5.16 | 1.04 | 0.234 | -- | -- | -- | -0.368 | 11.8 | -- | -- | -- | -- |
| 312.17 | 0.823 | 5.09 | 1.62 | -- | -1.53 | -- | -- | -0.0746 | -- | 21.94 | 3320 | -- | -- |
| 369.43 | 0.895 | 5.15 | -- | 0.13 | -0.981 | -- | -- | -0.34 | 7.94 | 23.44 | 2710 | -- | -- |
| 382.47 | 0.914 | 5.16 | 1.04 | -- | -- | -- | -- | -0.371 | -- | -- | -- | -- | -- |
| 407.68 | 0.945 | 5.18 | -- | 0.222 | -- | -- | -- | -0.484 | 11.6 | -- | -- | -- | -- |
| 368.89 | 0.895 | 5.21 | -- | -- | -1.13 | -- | -- | -0.591 | -- | 28.02 | 3448 | -- | -- |
| 410.78 | 0.946 | 5.19 | -- | -- | -- | -- | -- | -0.486 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 303.47 | temperature | 15 | 90 | > th | dose dependent | rect. | 13 | 22 |
| 2 | 304.53 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 4 | 304.79 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 6 | 305.10 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 7 | 305.38 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 8 | 305.57 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 23 | 305.58 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 34 | 306.73 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 13 |
| 38 | 306.80 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 8 |
| 39 | 306.80 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 11 |
| 42 | 306.82 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 69 | 307.69 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 17 |
| 76 | 308.83 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 92 | 309.59 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 10 |
| 106 | 309.95 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 127 | 310.16 | temperature | 20 | 4320 | > th | dose dependent | sin | 14 | NA |
| 137 | 310.26 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 138 | 310.27 | temperature | 10 | 4320 | > th | dose dependent | rect. | 16 | 11 |
| 147 | 310.32 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 10 |
| 170 | 310.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 174 | 310.43 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 179 | 310.45 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 196 | 310.55 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 2 |
| 212 | 310.63 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 242 | 310.75 | temperature | 10 | 4320 | > th | dose dependent | sin | 14 | NA |
| 388 | 311.23 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 397 | 311.25 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 415 | 311.30 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 421 | 311.32 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 444 | 311.38 | temperature | 30 | 4320 | < th | dose dependent | sin | 14 | NA |
| 467 | 311.46 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 468 | 311.46 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 557 | 311.77 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 588 | 311.89 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 602 | 311.92 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 950 | 312.88 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 969 | 312.95 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |